| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2732 |
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| Symbol | metH |
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| ID | 1184386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3030852 |
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| End bp | 3034571 |
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| Gene Length | 3720 bp |
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| Protein Length | 1239 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394101 |
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| Product | 5-methyltetrahydrofolate--homocysteine methyltransferase |
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| Protein accession | NP_792538 |
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| Protein GI | 28869919 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0346659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGACC GCAGCGCCCG CCATCAAGCC TTTATCACTG CTCTGAAACA GAGAATCCTG
ATTCTCGATG GCGGCATGGG CACCATGATC CAGAGCTACA GGCTTGAGGA AGAAGACTAT
CGGGGCAAAC GTTTTGCCGA CTGGCCAAGT GACGTCAAGG GCAACAACGA CCTGCTGATC
CTGACCCGTC CCGACGTGAT CGGCGCCATC GAGAAGGCGT ATCTGGATGC CGGTGCCGAC
ATCCTCGAAA CCAACACCTT CAACGCCACA CAGGTGTCCC AGGCCGACTA CGGCATGGAA
TCGATCGTCT ACGAGCTGAA CGTCGAAGGC GCCCGTCTGG CCCGTAAGGT CGCAGACGCC
AAAACCCTCG AAACCCCGGA CAAACCGCGC TTCGTTGCTG GCGTGCTCGG CCCGACCAGC
CGCACCTGTT CGTTGTCGCC GGACGTCAAC AACCCTGGCT ATCGCAACGT CACGTTCGAC
GAACTGGTGG AGAACTATAC CGAGGCCACC AAAGGCCTGA TCGAGGGCGG CGCCGACCTG
ATTCTGATCG AAACCATCTT CGACACCCTC AACGCCAAGG CGGCGATTTT CGCCGTGCAG
GGCGTGTTCG AAGAGTTGGG TTTTGAACTG CCTATCATGA TTTCCGGCAC CATCACCGAC
GCCTCCGGCC GCACCCTGTC GGGCCAGACT ACCGAAGCGT TCTGGAACTC GATCAGCCAT
GCAAAACCGG TCTCCGTCGG CCTGAACTGC GCCCTGGGTG CCAGTGAACT GCGCCCTTAC
CTGCAAGAGC TGGCCAACAA GGCCAACACT CATGTGTCTG CGCACCCCAA CGCCGGCCTG
CCCAACGCGT TCGGCGAGTA CGACGAACTG CCGAGCCAGA CTGCGAAGAT CATCGAAGAA
TTCGCTCAAA GCGGTTTCCT GAACATTGTC GGCGGCTGCT GCGGCACCAC ACCTGAGCAC
ATCAAGGCGA TCGCCGAGGC AGTGTCTGGT TATGCACCCC GTGAAATTCC AGACATCCCC
AAAGCCTGCC GCCTGTCGGG CCTTGAACCG TTCACCATCG ATCGCCAGTC GCTGTTCGTC
AACGTCGGCG AGCGCACCAA CATCACCGGC TCCGCCCGCT TTGCCCGCCT GATCCGTGAA
GACAACTACA CCGAAGCGCT GGAGGTCGCC CTGCAACAGG TCGAAGCCGG TGCCCAGGTG
ATCGACATCA ACATGGACGA GGGGATGCTC GACTCGAAGA AGGCCATGGT CACCTTCCTC
AACCTGATCG CAGGCGAGCC GGATATCTCT CGCGTGCCGA TCATGATCGA CTCCTCCAAG
TGGGAAGTGA TCGAGGCCGG TCTCAAGTGC ATTCAGGGCA AGGGCATCGT CAACTCGATC
AGCATGAAGG AAGGCGTCGA GCAGTTCATT CATCACGCTC GCCTGTGCAA GCGCTACGGT
GCGGCAGTCG TGGTGATGGC CTTCGACGAA CAGGGCCAGG CCGACACCGA AGCGCGCAAG
AAGGAAATCT GCAAGCGCTC GTACGACATT CTGGTCAACG AAGTGGGCTT CCCGCCGGAA
GACATCATCT TCGACCCGAA CATCTTCGCC ATTGCCACCG GTATCGAAGA GCACAACAAT
TACGCCGTGG ACTTCATCAA CGCCTGTGCC TACATCCGCG ATGAACTGCC GCACGCCCTG
ACCTCGGGCG GCGTGTCCAA CGTGTCGTTC TCGTTCCGCG GCAACAACCC GGTACGCGAA
GCCATTCACT CGGTGTTCCT GCTCCACGCG ATCCGCAATG GCCTGAGCAT GGGCATCGTC
AATGCCGGGC AGCTGGAAAT CTACGACCAG ATCCCGGCCG AGCTGCGCGA CTGTGTCGAA
GACGTGGTGC TCAACCGTAA TCCCGAAGGC ACCGAGGCGT TGCTGGCCAT TGCCGACAAG
TACAAGGGCG ATGGCAGCGT CAAGGAGGCT GAAACCGAAG AATGGCGCAG CTGGCCGGTC
AACCAGCGCC TGGAGCACGC GCTGGTCAAG GGCATCACTA CCCACATCGT GCAGGACACC
GAAGAGTCGC GCCTGGGCTT CACCCGGCCT ATCGAGGTGA TCGAAGGCCC GCTGATGTCC
GGCATGAACG TGGTCGGTGA CCTGTTCGGC GCGGGCAAGA TGTTTCTGCC GCAGGTGGTG
AAGTCTGCAC GGGTGATGAA ACAGGCGGTC GCGCACCTTA TTCCGTTCAT CGAACTGGAA
AAAGGCGACA AGCCCGAAGC CAAGGGCAAG ATCCTCATGG CCACGGTCAA GGGCGACGTT
CACGACATCG GCAAGAACAT CGTCGGCGTG GTGTTGGGCT GTAACGGCTA TGACATCGTC
GATCTGGGTG TGATGGTGCC TGCCGAGAAG ATCCTGCAGG TCGCCCGCGA CGAGAAGTGC
GACATCATCG GCCTGTCCGG GCTGATCACC CCGTCACTGG ACGAAATGGT GCATGTTGCC
CGTGAAATGC AGCGTCAGGA CTTCCACCTG CCCCTGATGA TCGGCGGCGC GACCACCTCC
AAGGCGCACA CGGCGGTCAA GATCGAGCCT AAATACAGCA ACGATGCAGT GATCTACGTC
ACCGACGCCT CCCGAGCGGT GGGGGTCGCG ACCCAGTTGC TGTCGAAAGA GCTGAAACCG
GCGTTCATTG AAAAAACCCG CCTTGAGTAC GTCGAAGTCC GCGAACGCAC GTCGGCGCGC
AGTGCACGCA CCGAGCGCCT GAGCTATGGC GCAGCGGTGG CGAAAAAGCC GAAGTTCGAC
TGGGAAAGTT ACACCCCTGC CAAGCCGACC TTCACTGGCA CCCGCGTTCT GCAGGACATC
GACCTGAACG TGCTGGCTGA CTACATCGAC TGGACGCCGT TCTTCATTTC CTGGGACCTG
GCCGGTAAAT ACCCGCGCAT CCTGACCGAC GAAGTGGTTG GCGAAGCTGC CACTGCACTG
TTTGAAGATG CCCAGCAAAT GTTGCGCAAA CTGATCGATG AAAAACTGAT CAGCGCGCGC
GCCGTATTCG GCTTCTGGCC GACCAACCAG ATCAACGATG ACGATCTGGA GGTCTATGGC
GAAGACGGCA AGCCGCTGGC GAAACTGCAT CACCTGCGCC AGCAGACCAT CAAGCCTGAC
GGCAAACCGA ATTTCTCGCT GGCAGACTTC GTTGCGCCCA AGGACAGCGG CCTGACCGAC
TACATTGGTG GTTTCATCAC CACCGCAGGC ATTGGCGCCG AGGAAGTGGC CAAGGCTTAT
CAGGACAACG GCGACGACTA CAACTCGATC ATGGTCAAGG CCTTGGCCGA CCGTCTCGCC
GAAGCCTGCG CCGAATGGCT GCACCAACAG GTGCGCAAGG ATTACTGGGG TTACGCGAAA
GACGAAGCGC TGGACAACGA GGCGCTGATC AAGGAGCAGT ACATGGGCAT TCGCCCCGCT
CCGGGCTATC CGGCGTGCCC TGACCATACC GAAAAGGGCA CCCTGTTCGC CCTGCTCGAC
CCGCTGCCGG AAGGCACGCC CGAGCACACG CCGGGCAAAA GCGGAGTGTT CCTGACCGAG
CACTACGCCA TGTTCCCGGC GGCGGCAGTC AGCGGCTGGT ATTTCGCTCA TCCTCAAGCG
CAGTACTTTG CAGTCGGCAA GGTCGACAAG GATCAGGTCG AAAGCTACAC AGCACGCAAG
GGTCAGGACC TGAGCGTCAC CGAACGCTGG CTGGCACCCA ACCTTGGCTA CGACGAGTAA
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| Protein sequence | MSDRSARHQA FITALKQRIL ILDGGMGTMI QSYRLEEEDY RGKRFADWPS DVKGNNDLLI
LTRPDVIGAI EKAYLDAGAD ILETNTFNAT QVSQADYGME SIVYELNVEG ARLARKVADA
KTLETPDKPR FVAGVLGPTS RTCSLSPDVN NPGYRNVTFD ELVENYTEAT KGLIEGGADL
ILIETIFDTL NAKAAIFAVQ GVFEELGFEL PIMISGTITD ASGRTLSGQT TEAFWNSISH
AKPVSVGLNC ALGASELRPY LQELANKANT HVSAHPNAGL PNAFGEYDEL PSQTAKIIEE
FAQSGFLNIV GGCCGTTPEH IKAIAEAVSG YAPREIPDIP KACRLSGLEP FTIDRQSLFV
NVGERTNITG SARFARLIRE DNYTEALEVA LQQVEAGAQV IDINMDEGML DSKKAMVTFL
NLIAGEPDIS RVPIMIDSSK WEVIEAGLKC IQGKGIVNSI SMKEGVEQFI HHARLCKRYG
AAVVVMAFDE QGQADTEARK KEICKRSYDI LVNEVGFPPE DIIFDPNIFA IATGIEEHNN
YAVDFINACA YIRDELPHAL TSGGVSNVSF SFRGNNPVRE AIHSVFLLHA IRNGLSMGIV
NAGQLEIYDQ IPAELRDCVE DVVLNRNPEG TEALLAIADK YKGDGSVKEA ETEEWRSWPV
NQRLEHALVK GITTHIVQDT EESRLGFTRP IEVIEGPLMS GMNVVGDLFG AGKMFLPQVV
KSARVMKQAV AHLIPFIELE KGDKPEAKGK ILMATVKGDV HDIGKNIVGV VLGCNGYDIV
DLGVMVPAEK ILQVARDEKC DIIGLSGLIT PSLDEMVHVA REMQRQDFHL PLMIGGATTS
KAHTAVKIEP KYSNDAVIYV TDASRAVGVA TQLLSKELKP AFIEKTRLEY VEVRERTSAR
SARTERLSYG AAVAKKPKFD WESYTPAKPT FTGTRVLQDI DLNVLADYID WTPFFISWDL
AGKYPRILTD EVVGEAATAL FEDAQQMLRK LIDEKLISAR AVFGFWPTNQ INDDDLEVYG
EDGKPLAKLH HLRQQTIKPD GKPNFSLADF VAPKDSGLTD YIGGFITTAG IGAEEVAKAY
QDNGDDYNSI MVKALADRLA EACAEWLHQQ VRKDYWGYAK DEALDNEALI KEQYMGIRPA
PGYPACPDHT EKGTLFALLD PLPEGTPEHT PGKSGVFLTE HYAMFPAAAV SGWYFAHPQA
QYFAVGKVDK DQVESYTARK GQDLSVTERW LAPNLGYDE
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