| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2627 |
|---|
| Symbol | |
|---|
| ID | 1184279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 2919555 |
|---|
| End bp | 2920397 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637393996 |
|---|
| Product | amino acid ABC transporter, periplasmic amino acid-binding protein |
|---|
| Protein accession | NP_792435 |
|---|
| Protein GI | 28869816 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0539096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACA AGCGCTCATC CGTTTCAGGT TTTCTTCCAG CGATGCTGGG CGTTCTGGCC
AGCATCGCTG TTAGTGGTTT TGTACTGGCG GATGCAACGC TGGACAAGGT TCAAGAGCGT
CATCGTCTGG TGGTCGGGGT GTTGCTGTCA GGTGGCCCGT TCGGCTCCAT CGACCCCCAG
ACCCGCAAAC CCCAAGGCGT CAATGTGGAG CTGGCCGAGG ACATAGGCAA GCGGCTGGGT
GTCGAGGTCG AACTGGTGTC GGTATTGACG GCCAACCGCG TGCAGTTTTT GCAGCAGGGC
AAGGTGGACC TGTTGATCGC CAACATGGAA TGGACGCCTG AGCGCGGCCA GCTTCTCGGC
TCGGTGCCCA CCCCGTTTTA CCGCGTGGGT GGGACTGCTG CCGTGCTCAA GGACAGCGCG
ATCACGCGCT GGGAAGACCT CAAGGGCCAA CCAGTCTGCA CCTCGCAAGG CAGCAGTTAC
ATCAAGGCAC TGACTGAGTT TGGTGCCGAC ATCAAAGCCT TCAAAAGTTC GTCCGAATCG
TTGCTTGCGT TGCGCGGCAA CAATTGTGTC GCGGCCGTGC ACGACGCCAC GCTGATCAAT
CCGTTGCTGG CAGGTAATGA TGAGTGGAAG GGCTATCGCG CCATCGCACC AGAGCTCAAT
CCTGCGCCAT CGGTGATCTG GACCCGTTCC GGTGAAACCG ACACGCAGAA TCGCCTCGAC
AGCATCGTTC AGGACTGGCA CCGCAGCGGC TGGCTGATCG AGCTGGAAAA ACGCTACAAC
ATCACCCCTG CATCACCCGC ACTGGTTGAA CTGCATGAGC AGTTCAAGGG CAAAGGCGCC
TGA
|
|---|
| Protein sequence | MSNKRSSVSG FLPAMLGVLA SIAVSGFVLA DATLDKVQER HRLVVGVLLS GGPFGSIDPQ
TRKPQGVNVE LAEDIGKRLG VEVELVSVLT ANRVQFLQQG KVDLLIANME WTPERGQLLG
SVPTPFYRVG GTAAVLKDSA ITRWEDLKGQ PVCTSQGSSY IKALTEFGAD IKAFKSSSES
LLALRGNNCV AAVHDATLIN PLLAGNDEWK GYRAIAPELN PAPSVIWTRS GETDTQNRLD
SIVQDWHRSG WLIELEKRYN ITPASPALVE LHEQFKGKGA
|
|---|
| |