| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2592 |
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| Symbol | |
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| ID | 1184244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 2863432 |
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| End bp | 2866575 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637393962 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_792401 |
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| Protein GI | 28869782 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.886048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCTGT TTTTTATCAA GCGGCCCAAC TTTGCCTGGG TGCTGGCCCT GTTCATTCTG
CTCGCCGGGC TGATGGCGCT GCCCGCCCTG CCCGTGGCGC AATACCCGAA CGTGGCACCG
CCACAGATCA CCATTACCGC GACTTACCCT GGCGCGTCCG CCAAGGTGCT GGTGGATTCG
GTGACCAGCG TCATCGAGGA AGAGCTCAAC GGCGCCAAAG GGATGCTGTA TTACGAGTCG
ACCAGCAACT CGACCGGCAG CGCAGAAATC AACGTGACGT TCGTGCCCGG CACTAACCCG
GACATGGCCC AGGTCGAGGT TCAGAACCGC ATCAAGAAAG CCGAAGCGCG CCTGCCGCAG
ACCGTGCTCA GCCAGGGTTT GCAGGTCGAA CAAGCCAGTT CCGGCTTCCT GATGATCTAC
ACCCTGAGCT ACACGGGCGA TTCAGCCAAC AAGGACACGG TCGCGCTGGC CGACTACGCC
GCGCGTAACG TCAACAATGA AATCAGCCGG GTAAACGGCG TCGGCAGGCT GCAATTCTTT
GCCGCGGAAG CTGCCATGCG CGTCTGGATC GACCCGCAGA AGCTGGTTGG TTTCGGGCTG
TCCATCGATG ACGTCAACGC TGCCGTGCGG GCGCAGAACG TGCAGGTCCC GGCAGGCAGT
TTCGGCAGCA GCCCGGGCTC GTCGCTGCAG GAGCTGACGG CCACCCTGGC GGTCAAAGGC
ACGCTGGACA ACCCGGAAGA ATTTGGCCGC ATCGTGTTGC GCGCCAACGA AGACGGCTCG
ACGGTGCACT TGTCCGACGT CGCGCGGGTG GCCATCGGCA GTCAGGATTA CAGTTTTGAA
TCCCGCCTCA ACGGCAAACG TGCGGTGGCC GGTGCGGTTC AGCTGTCACC GGGTGCCAAC
GCGATTGAAA CCGTCAAGGC AGTCAAACAG CGGCTCACCG AACTGTCGGT GAATTTCCCG
GAAGGCGTCG AATTTTCCGT GCCGTATGAC ACCTCACGCT TTGTCGATGT GGCCATCGAC
AAGGTGATCT ACACCCTGAT CGAGGCCATG GTGCTGGTGT TTCTGGTGAT GTTCCTGTTT
CTGCAGAACA TCCGCTACAC GCTGATCCCG ACTATCGTGG TGCCGGTGTG CCTGGCCGGT
ACGCTGGCGA TCATGTACCT GCTGGGCTTC TCAGTGAACA TGATGACCAT GTTCGGCATG
GTGCTGGCCA TCGGTATTCT GGTCGACGAC GCCATCGTGG TGGTCGAAAA CGTCGAGCGC
ATCATGGCCG AGGAAGGCCT CTCCCCTGCG GCAGCGACCG TGAAGGCGAT GCAGCAGGTG
TCAGGTGCGA TTTTCGGCAT CACCCTGGTG TTGGCTGCGG TGTTTCTGCC GCTGGCGTTC
ATGGGTGGCT CGGTCGGGGT CATCTACCAG CAGTTCTCAC TGTCGCTGGC CGTATCGATT
CTGTTCTCCG GCTTTCTGGC CCTCACGTTT ACCCCGGCGT TGTGCGCCAC GCTGCTCAAG
CCAATCCCGG CGGGTCATCA TGAAAAGCGC GGTTTCTTCG GCGGTTTCAA TCGGCTGTTC
GGCAAGTTCA CCGACCGCTA CGAGCGCGTC AGCTCCAGCA TGATCAAACG CGCTGGCCGC
TACATGCTGC TGTATGTCGG TATCGTCGGC TTGCTGGGCT TTTTCTACCT GCGTCTGCCA
GAGTCGTTTG TGCCGGTGGA AGACCAGGGT TATCTGATCA TCGACGTGCA GTTGCCGCCG
GGAGCCACCC GGGCGCGCAC CGACGCCACC GCGCAGTTGC TGGAAATCTA CATGTTGTCC
CGCGAGGCGA CCGGGGCCGT GACCATGCTG CTGGGTTTCA GTTTTTCCGG CATGGGCGAA
AACGCCGGTC TGGCGTTCCC GACCCTCAAA GACTGGTCGG TGCGCGGCGA CGGGCAATCG
GCGGGTGAAG AAGCGGCGGC GTTCAATCAG CATTTTGCCG GTCTCAGCGA CGGCACGGTC
ATGGCCGTGA CACCGCCGCC TATCGACGGG CTGGGCACTT CAGGCGGTTT CGCGCTGCGT
TTGCAAGACC GTGCAGGTCT GGGCCGCGAA GCCCTGCTTG CGGCGCGCAA CGAGTTGCTG
GGCAAAGCCA ACGGCAACCC GAAGATTCTC TACGCGATGA TGGAAGGGCT GGCCGAAGCA
CCTCAATTAC GCCTGAACAT CGACCGCGAA AAAGCGCGGG CGCTGGGGGT CAGCTTCGAG
TCGATAAGCA ACGCGCTGTC CACCGCTTTC GGCTCCTCGG TGATCAGTGA TTTCGCCAAC
GCCGGACGTC AGCAGCGGGT TGTGGTGCAG GCCGAGCAGA GTTCGCGGAT GACCCCGGAA
AGCGTGCTCA AGCTGTACGT GCCCAACAGC AGCGGCACGC TGGTGCCACT GAGTGCATTC
GTTTCCACGC ACTGGGAAGA AGGCCCGGTG CAGATCGCCC GTTACAACGG CTACCCCACC
TTCAGGATCG CGGGTGACGC ACCACCGGGT GTCAGTACCG GCGAAGCGAT GGCGGAGATT
GAAAGAATCG TCTCCCGGTT GCCACCCGGC ATCGGTTACG AATGGACCGG CCTCTCCTAC
CAGGAAAAAG TAGCCAGCGG CCAGGCGACC GGGCTGTTTG CCCTGGCCTT GCTGGTGGTC
TTTCTACTGC TGGTCGCGCT TTATGAAAGC TGGGCGATCC CGCTGGTGGT CATGCTGATT
GTGCCGGTGG GCGCACTGGG TTCGGTGCTG GCAGTGACCG CGGTCGGCAT GCCGAACGAC
GTTTACTTCA AGGTGGGGCT GATCACCATC ATTGGCCTGG CGGCGAAAAA CGCGATTCTG
ATCGTCGAGT TCGCCAAGGA GCTGTGGGAT CAAGGCCATT CGCTGCGTGA TGCAGCGCTT
CAGGCCGCAA GACTGCGCTT TCGGCCAATT GTCATGACCT CACTGGCGTT CATCCTCGGC
GTGGTGCCGT TGACACTGGC GACCGGCGCA GGCGCTGCAA GCCAGCGGGC CATCGGCACC
GGAGTGATCG GCGGCATGCT CAGCGCGACG CTGCTGGGGG TGGTTCTGGT GCCGATCTTC
TTCGTCTGGG TGCTGTCAGT GCTGCGGCGC AAGCCCCACG AGACGAAACA GCTTGCTGAC
GCCGAGCAGC CCGACAAAGA CTGA
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| Protein sequence | MSLFFIKRPN FAWVLALFIL LAGLMALPAL PVAQYPNVAP PQITITATYP GASAKVLVDS
VTSVIEEELN GAKGMLYYES TSNSTGSAEI NVTFVPGTNP DMAQVEVQNR IKKAEARLPQ
TVLSQGLQVE QASSGFLMIY TLSYTGDSAN KDTVALADYA ARNVNNEISR VNGVGRLQFF
AAEAAMRVWI DPQKLVGFGL SIDDVNAAVR AQNVQVPAGS FGSSPGSSLQ ELTATLAVKG
TLDNPEEFGR IVLRANEDGS TVHLSDVARV AIGSQDYSFE SRLNGKRAVA GAVQLSPGAN
AIETVKAVKQ RLTELSVNFP EGVEFSVPYD TSRFVDVAID KVIYTLIEAM VLVFLVMFLF
LQNIRYTLIP TIVVPVCLAG TLAIMYLLGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
IMAEEGLSPA AATVKAMQQV SGAIFGITLV LAAVFLPLAF MGGSVGVIYQ QFSLSLAVSI
LFSGFLALTF TPALCATLLK PIPAGHHEKR GFFGGFNRLF GKFTDRYERV SSSMIKRAGR
YMLLYVGIVG LLGFFYLRLP ESFVPVEDQG YLIIDVQLPP GATRARTDAT AQLLEIYMLS
REATGAVTML LGFSFSGMGE NAGLAFPTLK DWSVRGDGQS AGEEAAAFNQ HFAGLSDGTV
MAVTPPPIDG LGTSGGFALR LQDRAGLGRE ALLAARNELL GKANGNPKIL YAMMEGLAEA
PQLRLNIDRE KARALGVSFE SISNALSTAF GSSVISDFAN AGRQQRVVVQ AEQSSRMTPE
SVLKLYVPNS SGTLVPLSAF VSTHWEEGPV QIARYNGYPT FRIAGDAPPG VSTGEAMAEI
ERIVSRLPPG IGYEWTGLSY QEKVASGQAT GLFALALLVV FLLLVALYES WAIPLVVMLI
VPVGALGSVL AVTAVGMPND VYFKVGLITI IGLAAKNAIL IVEFAKELWD QGHSLRDAAL
QAARLRFRPI VMTSLAFILG VVPLTLATGA GAASQRAIGT GVIGGMLSAT LLGVVLVPIF
FVWVLSVLRR KPHETKQLAD AEQPDKD
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