Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_2348 |
Symbol | |
ID | 1183999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 2603819 |
End bp | 2604673 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637393725 |
Product | shikimate 5-dehydrogenase, putative |
Protein accession | NP_792165 |
Protein GI | 28869546 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.43472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCATG CTGAACACAC CTCCGTACTC GCCGGCCTGA TCGGCTCCGG CATCCAGGCT TCGCGAACGC CCGCCATGCA TGAGCACGAA GGCGATGCAC AGGGCCTGCG CTACCTGTAC CGGCTGATCG ATATCGACGC GCTGCAACTG GACATCAACG CCCTGCCCCG GCTTGTCGAA AGCGCGCAGA ACTGCGGTTT TACCGGCCTG AATATCACCT TTCCCTGCAA ACAGGCGGTC ATCCCGTTGC TGGACGAACT GTCCGACGAA GCGCGCGGCA TCGGTGCGGT CAACACCGTG GTTTTCAAGG ACGGAAAACG CATCGGGCAT AACACCGACT GTCTGGGTTT TGCCGAAGGT TTCCAGCGCG GGCTGGACAA AGCGCCACGT CAGCATGTGG TGCAAATGGG CGCAGGTGGT GCGGGCGCTG CCGTGGCTCA TGCGCTGCTG AGCGCAGGCG TCGAGCGCCT CACCGTGTTC GAGGTCGAGC CGCAGCGTGC GCAAGGCCTG GTGGACAACC TCAATGAGCA TTTCGGTGCC GGACGCGCGC AGGTCGGTCT TGACTTGCCT GCGGCAATGG CCGAAGCCGA CGGGCTGGTC AATACCACGC CGGTGGGCAT GGCCAAGCTG CCGGGCACGC CGTTGCCGGT TGAACTGCTG CGGCCCGCGC TGTGGGTGGC TGAAATCATT TACTTCCCGC TGGAAACCGA GCTGCTCAAG CACGCCCGCA CACTGGGCTG CCGTACGCTG GATGGCAGCA CTATGGCGGT GTTTCAGGCG GTCAAGGCGT TCGAGCTGTT CAGTGGCCGG TCCGCTGATG CGCAACGGAT GATGGCGCAC TTCCACACCC TGTAA
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Protein sequence | MTHAEHTSVL AGLIGSGIQA SRTPAMHEHE GDAQGLRYLY RLIDIDALQL DINALPRLVE SAQNCGFTGL NITFPCKQAV IPLLDELSDE ARGIGAVNTV VFKDGKRIGH NTDCLGFAEG FQRGLDKAPR QHVVQMGAGG AGAAVAHALL SAGVERLTVF EVEPQRAQGL VDNLNEHFGA GRAQVGLDLP AAMAEADGLV NTTPVGMAKL PGTPLPVELL RPALWVAEII YFPLETELLK HARTLGCRTL DGSTMAVFQA VKAFELFSGR SADAQRMMAH FHTL
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