Gene PSPTO_2176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2176 
Symbolasd-1 
ID1183827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp2396095 
End bp2397207 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content62% 
IMG OID637393558 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionNP_791998 
Protein GI28869379 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0476754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTG TAGGTCTGAT CGGTTGGCGT GGCATGGTCG GTTCCGTGCT CATGCAGCGG 
ATGCGGGAAG AGCAGGACTT CGATCTCATT GAGCCGGTGT TCTTCACTAC CTCCAATGTC 
GGTGGCCAGG CGCCTTCGGT GGGCAAGGAC GTTGCCCCGC TGAAAGATGC CTACAGCATC 
GACGAACTGA AAACCCTGGA CGTGGTGCTG ACCTGTCAGG GCGGCGATTA CACCAACGAG 
GTGTTCCCCA AGCTGCGCGA AGCGGGCTGG CAGGGTTACT GGATCGATGC GGCCTCCAGC 
CTGCGCATGC AGGATGACGC GGTTATCGTG CTCGACCCGG TCAACCGCAA GGTCATCGAC 
CAGCAACTGG ACGCGGGCAC CAAAAACTAC ATCGGCGGCA ACTGCACGGT CAGCCTGATG 
CTTATGGGCC TGGGCGGCCT GTTCGACGCC GGGCTGGTCG AGTGGATGAA CGTCATGACC 
TATCAGGCGG CCTCCGGGGC CGGCGCGCAG AACATGCGTG AACTGATCAA GCAGATGGGC 
GCGGTGCACG CGTCTGTTGC GGATGAACTG GCCAACCCGG CCAGTGCCAT CCTGGATATC 
GACCGCAAGG TGGCAGAAGC CATGCGCAGC GAGTCGTTCC CGACCGAGAA CTTCGGCGTG 
CCTCTGGCCG GCAGTCTGAT CCCGTGGATC GACAAGGCGC TGCCCAATGG CCAGAGCCGC 
GAAGAGTGGA AAGGCCAGGC CGAGACCAAC AAGATTCTCG GTCGCTTCAA GAGCCCGATC 
CCGGTCGACG GCATCTGCGT GCGCATCGGC GCCATGCGCT GTCACAGCCA GGCACTGACC 
ATCAAGCTGA ACAAGGATGT GCCGATTGCG GACATCGAAG GCTTGATCAG CCAGCACAAC 
CCGTGGGTCA AACTGGTGCC GAATACCCGC GAAGCCAGCG CGCAAGAACT CAGCCCGACC 
GCCGTAACCG GCACCATGAG TGTGCCGGTG GGCCGTCTGC GCAAGCTGAA CATGGGTTCG 
CAGTACCTGG GCGCCTTCAC AGTGGGTGAC CAATTGTTGT GGGGCGCGGC CGAACCGCTG 
CGGCGCATGC TGAGGATCCT GCTGGAGCGT TGA
 
Protein sequence
MKRVGLIGWR GMVGSVLMQR MREEQDFDLI EPVFFTTSNV GGQAPSVGKD VAPLKDAYSI 
DELKTLDVVL TCQGGDYTNE VFPKLREAGW QGYWIDAASS LRMQDDAVIV LDPVNRKVID 
QQLDAGTKNY IGGNCTVSLM LMGLGGLFDA GLVEWMNVMT YQAASGAGAQ NMRELIKQMG 
AVHASVADEL ANPASAILDI DRKVAEAMRS ESFPTENFGV PLAGSLIPWI DKALPNGQSR 
EEWKGQAETN KILGRFKSPI PVDGICVRIG AMRCHSQALT IKLNKDVPIA DIEGLISQHN 
PWVKLVPNTR EASAQELSPT AVTGTMSVPV GRLRKLNMGS QYLGAFTVGD QLLWGAAEPL 
RRMLRILLER