| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2072 |
|---|
| Symbol | |
|---|
| ID | 1183717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 2249264 |
|---|
| End bp | 2249767 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637393450 |
|---|
| Product | auxin-binding protein, putative |
|---|
| Protein accession | NP_791895 |
|---|
| Protein GI | 28869276 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3837] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0382674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGACC GCGCACGTGA ACTGGCGTCT CGTCTGATCC GCAATTTCAA TGAAGCGTCA
CTCGAACATG AAGTTCGTGA GCCGCTGTAT GAAAGCGCAG CAGCGCGCCT CGGCACTGGG
ACGGTGGCAC ACAAGCTTGG GGCTTCTGTC GATGTCGTCG CGCCCGGCAA GCGCTCGTGC
CCTTATCATT TCCATCACGC TCAGGAAGAA ATGTTCGTGA TCATCGAGGG CGAAGGCAGT
TTGCGTGTTG CCGGCGAGAT GTTGCCGATC AAGACGGGCG ACGTCCTGTT TATTCCAGCG
GGCCCCGAAT ACCCTCATCA GATCATCAAT ACATCACAGG CACCGCTCAA GTACCTGTCG
ATCAGCACGC GGGAGACGCC CGAGGTGTGT GAATACCCGG ACTCCGGAAA GTATCAGGCG
ATGGTTTCAG CCAACGGGGC ACGTGTGTTC ACCGCCAACC AGCGGACCAC TGAAAACGTC
GATTACTGGG ACGGCGAACC CTGA
|
|---|
| Protein sequence | MNDRARELAS RLIRNFNEAS LEHEVREPLY ESAAARLGTG TVAHKLGASV DVVAPGKRSC
PYHFHHAQEE MFVIIEGEGS LRVAGEMLPI KTGDVLFIPA GPEYPHQIIN TSQAPLKYLS
ISTRETPEVC EYPDSGKYQA MVSANGARVF TANQRTTENV DYWDGEP
|
|---|
| |