| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1693 |
|---|
| Symbol | |
|---|
| ID | 1183330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1862367 |
|---|
| End bp | 1863722 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637393065 |
|---|
| Product | RNA methyltransferase, TrmA family |
|---|
| Protein accession | NP_791518 |
|---|
| Protein GI | 28868899 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC ATGAACGAGG CCTGCGCTTC CAGCCCACGG GCGGCGTCAA GAGCGTGCAG
ATTCCTGCCG GTAAAAAGCA GCGTCTGAGC ATCGAACGGC TGTCCGATGA CGGTCGTGGC
ATTGCGTTTC TTGAGGGCAA GACCTGGTTC GTCGCGGGCA GTCTGGCCGG TGAAGAGGTC
GAGGCGCGGG TGCTCAATGC GCGCGGCAAG GTGGTCGAAG CGCGCACCGA GCGGGTGTTT
GTCGCCAGCG ACCTGCGACG CGCCCCGGCC TGTGATTATT TTGGCCGTTG TGGCGGATGC
AGCGTTCAGC ATGTGCCCCA CGAAGAACAG CTTGCCCTGA AACAGCGCAT GCTCGCCGAG
CAGTTGTTGC GCGTGGCGAA CGTGGTGCCG GATGAATGGG CCGCGCCGTT GAGCGGCGCC
GAACTGGCCT ACCGCAGGCG CGCGCGGGTC GCGGTGCGCT GGGATGCCAA GGCCAAACGG
CTCGACGTGG GCTTTCGTGC GGCGGCCAGC CAGGACATCG TCAGTATCGA AGAGTGTCCG
GTGCTGGTAC AGGCCTTGCA ACCGATCATG AGTCAGTTGC CGGCCATGCT CAAAAGTTTC
AGCAAACCGC AAGTGTTGGG TCACGTCGAG CTGTTCAGCG GCTCTTCCAC TGCGGTGTTG
CTGCGTCACA CCGCGCCTTT GGCGGAGGCT GATCTGGCAA CGCTGCAAGC GTTTTGCAAG
ACGCATGGCG CGCAGCTCTG GCTGCACGGT GAAGGTGAGC CACAGCCGGC CAGCCCAGGC
GATACGCTGG GTTACCGGCT TGAACCGTGG AACCTGCAAC TGGCATGGCG ACCGGGAGAT
TTCATTCAGG TCAACGCGGC GGTCAATACC GCGATGATCG AGCAGGCGCT GCACTGGCTG
GCACCTGCGG CTGATGAACG AGTTATGGAC CTGTTTTGCG GCTTGGGCAA CTTCGCCCTG
CCGCTGGCGA GTCTGGCAAA AGACGTGGTG GCGGTCGAAG GCGTTGCGAC CATGGTCGAA
CGTGCAGCGG TCAACGCAAT GAGTAATGAT CTGCACAATG TGCGGTTTTT TCAGGCGGAT
CTTTCCCAGC CGCTGACACA CGCCGACTGG GCGGCAGAGG GGTTTTCTGC GGTACTCTTG
GACCCACCGC GTGACGGAGC CTTTGAAGTG GTGCGCCAGA TCAGAAAAAC AGGCGCTCAA
CGGTTGCTTT ATGTCTCATG CAACCCGGCA ACCTTGGCTC GTGACACGGT CGAACTGGTT
AAACAGGGCT ACCGATTAAA ACGTGCCGGA ATTCTTGATA TGTTTCCACA AACGGCGCAT
GTCGAGGCGA TGGCTTTATT TGAAGTGAGT AAGTGA
|
|---|
| Protein sequence | MAKHERGLRF QPTGGVKSVQ IPAGKKQRLS IERLSDDGRG IAFLEGKTWF VAGSLAGEEV
EARVLNARGK VVEARTERVF VASDLRRAPA CDYFGRCGGC SVQHVPHEEQ LALKQRMLAE
QLLRVANVVP DEWAAPLSGA ELAYRRRARV AVRWDAKAKR LDVGFRAAAS QDIVSIEECP
VLVQALQPIM SQLPAMLKSF SKPQVLGHVE LFSGSSTAVL LRHTAPLAEA DLATLQAFCK
THGAQLWLHG EGEPQPASPG DTLGYRLEPW NLQLAWRPGD FIQVNAAVNT AMIEQALHWL
APAADERVMD LFCGLGNFAL PLASLAKDVV AVEGVATMVE RAAVNAMSND LHNVRFFQAD
LSQPLTHADW AAEGFSAVLL DPPRDGAFEV VRQIRKTGAQ RLLYVSCNPA TLARDTVELV
KQGYRLKRAG ILDMFPQTAH VEAMALFEVS K
|
|---|
| |