Gene PSPTO_1638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1638 
Symbol 
ID1183275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1794648 
End bp1795316 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content62% 
IMG OID637393010 
ProductABC transporter, ATP-binding protein 
Protein accessionNP_791463 
Protein GI28868844 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCAAG TGCGAAACGT ATTCAAGCGC TACACCACGG CACAGGGGCC GCTGAATGTA 
TTAAGGGGCG TGGACCTGCA CCTGACACAG GGTGAAAGCC TGGCGTTGAT GGGCGAATCC 
GGCAGTGGCA AGAGCACATT GCTGCATCTG GTCGCGGGCC TTGATCAGGT CGATGACGGC 
AGCATCGAGA TTGCCGGCCA ACGCCTGGAC CTGATGAACG AAAGCCAACT GGCTAACTGG 
CGGCGCACCG AAATCGGTCT GGTGTTTCAG CAGTTCAACC TGATCGGCAG CCTTAAAATC 
GCCGACAATC TGGCGTTTCA GGCTCGGCTG GCCGGGCGTT TCGATGCGCT CTGGCAGACG 
CACTTGATCG AACGTCTGGG GCTGGGCACG CTGCTGGATC GTTATCCCGA GCAACTGTCC 
GGCGGACAAC AGCAGCGGGT AGCGATAGGT CGCGCCCTCG CTTCACGGCC CAGCCTGCTG 
CTGGCTGACG AGCCCACCGG CAATCTCGAC GAGACCACCA GTGACGAAGT GCTGCAATTG 
TTGCTGGATG TGCTCGCCGA CAGCCCCACC AGCCTGTTGA TGGTCACCCA CAGCCCGCGG 
GTCGCTGACC GACTGGCGCG CAGAGTGGTG CTGCATCTCG GTCGTCTGGC AGTCGAAGGC 
GAGCGCTGA
 
Protein sequence
MLQVRNVFKR YTTAQGPLNV LRGVDLHLTQ GESLALMGES GSGKSTLLHL VAGLDQVDDG 
SIEIAGQRLD LMNESQLANW RRTEIGLVFQ QFNLIGSLKI ADNLAFQARL AGRFDALWQT 
HLIERLGLGT LLDRYPEQLS GGQQQRVAIG RALASRPSLL LADEPTGNLD ETTSDEVLQL 
LLDVLADSPT SLLMVTHSPR VADRLARRVV LHLGRLAVEG ER