| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1587 |
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| Symbol | srmB |
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| ID | 1183224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1746321 |
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| End bp | 1747682 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637392959 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | NP_791412 |
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| Protein GI | 28868793 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.451548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTTTCG TCGAGGTAAC ACCCGTGTTT TCCGAATTCG CCCTGCACGA ACGCCTGCTT
AAAGCTGTGG CCGAGCTTAA ATTTGTCGAG CCTACGCCCG TGCAGGCGGC CGCCATCCCG
CTCGCACTGC AAGGGCGCGA CCTGCGGGTG ACTGCGCAAA CCGGTAGTGG CAAGACAGCC
GCCTTTGTGT TGCCGATCCT CAACCGCCTG ATCGGCCCGG CCAAGGTTCG CGTTGATATT
CGCGCTGTGA TCCTGCTGCC GACCCGTGAG CTGGCTCAGC AGACCCTCAA GGAAGTCGAG
CGGTTTTCCC AGTTCACCTT CGTCAAGGCC GGTTTGATCA CCGGTGGTGA GGATTTCAAG
GTCCAGGCAG CCATGCTGCG CAAGGTTCCG GACATCCTCA TCGGCACGCC GGGTCGTCTG
CTCGAGCAGC TCAACGCTGG CAACCTCGAC CTCAAGCACG TTGAAGTGCT GGTGCTGGAC
GAAGCCGACC GCATGCTTGA CATGGGCTTC TCCGAAGACG TCGAACGTCT GGCAGGCGAA
TGCGCCGGCC GCGAGCAGAC CATGCTGTTC TCTGCAACCA CCGGCGGTGC CGGCCTGCGG
GAAATGATCG GCAAGGTGCT CAAGGATCCA CAGCATCTGC AAGTCAACAG CGTCAGCGAA
CTGGCTTCCG GCACACGCCA CCAGATCATC ACTGCCGACC ACAACGTGCA TAAAGAGCAG
GTGTTGAACT GGCTGCTGGC CAACGAGACC TACCAGAAAG CCATTATCTT CACCAACACC
AAGGCCATGG CCGACCGCCT GTACGGCCGT CTGGTTGCGC TGGAATACAA AGCGTTCGTG
CTGCACGGCG ACAAGGACCA GAAGGACCGC AAGGCCGCCA TCGACCGCCT GAAGCAGGGC
GGCGCGAAGA TCATGGTCGC GACCGATGTA GCGGCTCGCG GTCTTGATGT CGAAGGCCTG
GACATGGTGA TCAACTTCGA CATGCCACGC AGCGGCGACG ATTACGTCCA CCGCGTCGGT
CGTACCGGCC GTGCGGGCAG CGACGGTCTG GCGATCTCGC TGATCTGTCA TGGCGACTGG
AACCTGATGT CGAGCGTCGA GCGCTACCTC AAGCAGAGCT TCGAGCGTCG CGTCATCAAG
GAAGTCAAAG GCACCTACGG CGGGCCGAAG AAGGTCAAGG CGTCGGGCAA GGCGGTAGGC
GTCAAGAAGA AAAAGACCGA CGTGAAGGGC GACAAGAAGA AAGTAGCGGC CAAAGGCCCT
ACCAAGCGCA AGACGGTCAA CCGTCCCAAG TCTGATCTGG TCAGCCAGGA CGGCATGGCA
CCCCTGAAAA AACGCAGCAC CCCGGCCCCT GCTGCCGAGT GA
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| Protein sequence | MFFVEVTPVF SEFALHERLL KAVAELKFVE PTPVQAAAIP LALQGRDLRV TAQTGSGKTA
AFVLPILNRL IGPAKVRVDI RAVILLPTRE LAQQTLKEVE RFSQFTFVKA GLITGGEDFK
VQAAMLRKVP DILIGTPGRL LEQLNAGNLD LKHVEVLVLD EADRMLDMGF SEDVERLAGE
CAGREQTMLF SATTGGAGLR EMIGKVLKDP QHLQVNSVSE LASGTRHQII TADHNVHKEQ
VLNWLLANET YQKAIIFTNT KAMADRLYGR LVALEYKAFV LHGDKDQKDR KAAIDRLKQG
GAKIMVATDV AARGLDVEGL DMVINFDMPR SGDDYVHRVG RTGRAGSDGL AISLICHGDW
NLMSSVERYL KQSFERRVIK EVKGTYGGPK KVKASGKAVG VKKKKTDVKG DKKKVAAKGP
TKRKTVNRPK SDLVSQDGMA PLKKRSTPAP AAE
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