Gene PSPTO_1540 details

Gene Information

• Locus tag: PSPTO_1540
• Symbol: dxr
• ID: 1183177
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1698441
• End bp: 1699631
• Gene Length: 1191 bp
• Protein Length: 396 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637392912
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: NP_791365
• Protein GI: 28868746
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.542945
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTGGGC CGCAACACAT TACCATTCTG GGTGCAACCG GCTCGATTGG TCTGAGCACG 
CTGGATGTCG TTGCACGTCA TCCGACGCTT TATCAGGTGT TTGCGCTCAC CGGCTTCAGT 
CGTCTGGACG AGTTGCTGGC CCTGTGCATC AAGCACACGC CGCAATACGC GGTAGTGCCC 
GAGCAGGTTG CCGCTCGAAA ACTGCAGGAT GACCTGGCGG CGGCCGGGCT CGATACCCGA 
GTGCTGGTGG GCGAGGGCGG TCTGTGCGAA GTGGCGGCGC ATCCTATGGT CGATGCGGTT 
ATGGCGGCCA TCGTCGGCGC GGCTGGCTTG CGTCCGACAC TGGCTGCGGT CGAGGCGGGC 
AAGAAGGTGT TGCTGGCCAA CAAGGAAGCG CTGGTCATGT CCGGCGCCCT GTTCATGCAG 
GCTGTGCGCC AGAGCGGTGC GGTGCTGCTG CCTATCGACA GCGAACACAA TGCGATTTTC 
CAGTGCCTGC CCGGCGATTT TGCTCGCGGT CTGGGCGCTG TCGGTGTGCG GCGCATCATG 
TTGACTGCCT CAGGCGGGCC GTTTCGCGAA ACACCGCTGG AGCAGTTGCA GGATGTAACC 
CCGGAACAGG CCTGTGCTCA TCCGGTCTGG TCAATGGGGC GCAAGATTTC GGTCGATTCG 
GCGACCATGA TGAACAAGGG GCTGGAGCTG ATTGAAGCCT GCTGGCTGTT CGACGCACGC 
CCTGATCAGG TAGAGGTGGT GATTCACCCT CAAAGCGTGA TCCACTCGCT GGTCGATTAC 
GTTGATGGCT CGGTACTGGC CCAGTTGGGT AATCCCGACA TGCGTACGCC TATTGCCAAT 
GCACTGGCAT GGCCTGCACG TGTAGACTCT GGCGTCGCGC CACTGGATCT GTTTCGCATT 
GGTCAGCTGG ATTTCCAAGA GCCCGACGAG GAGCGTTTTC CTTGCCTGAG GCTGGCGCGT 
CAGGCTGCCG AAGCTGGCGG CAGTGCGCCC GCCATGCTCA ATGCCGCCAA TGAAGTGGCT 
GTGGCGGCAT TTCTCGATGG GCGTATCCGT TACCTGGAAA TCGCCGGTAT CATCGAGGAG 
GTTCTGAATC GTGAGCCTGT GACTGCGGTC GTAGGGCTCG ATGCGGTATT TGCAGCGGAT 
GCGAAGGCGC GTTTGCTGGC AGGCCAATGG CTCGAAAGAA ACGAGCGATA A 

 

Protein sequence

MSGPQHITIL GATGSIGLST LDVVARHPTL YQVFALTGFS RLDELLALCI KHTPQYAVVP 
EQVAARKLQD DLAAAGLDTR VLVGEGGLCE VAAHPMVDAV MAAIVGAAGL RPTLAAVEAG 
KKVLLANKEA LVMSGALFMQ AVRQSGAVLL PIDSEHNAIF QCLPGDFARG LGAVGVRRIM 
LTASGGPFRE TPLEQLQDVT PEQACAHPVW SMGRKISVDS ATMMNKGLEL IEACWLFDAR 
PDQVEVVIHP QSVIHSLVDY VDGSVLAQLG NPDMRTPIAN ALAWPARVDS GVAPLDLFRI 
GQLDFQEPDE ERFPCLRLAR QAAEAGGSAP AMLNAANEVA VAAFLDGRIR YLEIAGIIEE 
VLNREPVTAV VGLDAVFAAD AKARLLAGQW LERNER