| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1432 |
|---|
| Symbol | pilF |
|---|
| ID | 1183069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1569793 |
|---|
| End bp | 1570551 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637392805 |
|---|
| Product | type IV pilus biogenesis protein PilF |
|---|
| Protein accession | NP_791258 |
|---|
| Protein GI | 28868639 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTGC GTGCCTCGTT GCTGCTATGT GCTGTCGTGT TGCTGACGGG GTGCGTGTCC
ACGGGCAACG TCAACCCGAT GACCACGACG CAGGGGCGTG AAGAGGCGCG CAGGGCCTAC
GTGCAGCTGG GGCTCGGCTA CTTCGAGCAG GGTCAGACCG AGCGCGCCAA GGTTCCGCTG
AAAAAGGCAC TTGAGCTCGA CAGTTCAGAT GCGCAGGCCA ATGCTGCGCT GGCGCTGGTG
TTTCAGACCG AAATGGAGCC GCAACTGGCC GAGCAATACT TTCGCAAGGC GCTGGCTTCC
AGTAACAACG AAACACGCAT CGTCAATAAT TACGGCAGCT TTCTGTTCGA GCAAAAGCGT
TACCAGGAAG CTTACGAGCG GTTTGAGCAG GCTGCTGCCG ACAACCTGTA TCCTGAGCGG
TCACGGGTCT TTGAAAGTCT GGGCATGACC TCGCTCAAGC TGGGCAATCG TGAGCAGGCC
CGCGAGCAAT TCACCAAGGC GCTGCGTCTG GATCGTCAAC AGCCGCGTTC GTTACTGGAA
ATGGCTCAGT TGTATTACGA AGACAGGCAA TATGTGCCCG CACGTGATTA TTACGACCGT
TTTAGCCAAC TCAGTGAGCA AAATGCACGT AGTCTATTGC TCGGCACACG TTTGGCGAAG
GTCTACGATG ACCGCAACAA GGCAGCCAGC TATGGCCTGC AATTGAAAAG ACTCTATCCC
GGTACGCCGG AATATCAGCA ATACCTGTCG GAGCAATGA
|
|---|
| Protein sequence | MSVRASLLLC AVVLLTGCVS TGNVNPMTTT QGREEARRAY VQLGLGYFEQ GQTERAKVPL
KKALELDSSD AQANAALALV FQTEMEPQLA EQYFRKALAS SNNETRIVNN YGSFLFEQKR
YQEAYERFEQ AAADNLYPER SRVFESLGMT SLKLGNREQA REQFTKALRL DRQQPRSLLE
MAQLYYEDRQ YVPARDYYDR FSQLSEQNAR SLLLGTRLAK VYDDRNKAAS YGLQLKRLYP
GTPEYQQYLS EQ
|
|---|
| |