| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1393 |
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| Symbol | hrcT |
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| ID | 1183029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1533169 |
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| End bp | 1533963 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637392765 |
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| Product | type III secretion protein HrcT |
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| Protein accession | NP_791220 |
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| Protein GI | 28868601 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4791] Type III secretory pathway, component EscT |
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| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCTGG ACGCGCAGAA TTTCTTCGAT CTCATCCTCG GCATGGGCCT GGCAATGGCG
CGTCTGGTGC CGTGCATGCT GCTGGTGCCG GCCTTTTGTT TCAAATACCT GAAAGGCCCA
CTGCGCTATG CGGTAGTGGC GGTGGTAGCG ATGATCCCTG CGCCCGGCAT CAGCCGCGCA
CTGACCTCAC TCAATGACGA CTGGTTTGCC ATCGGCGGCC TGCTGCTCAA GGAAGTCGTG
CTGGGCACGC TGCTGGGGAT GCTGCTGTAT GCGCCCTTCT GGATGTTCGC CTCGGTGGGC
GCTCTGCTCG ACAGCCAGCG CGGTGCACTC AGCGGCGGCC AGATAAACCC GTCGCTGGGG
CCTGACGCTA CGCCGCTGGG CGAGCTGTTT CAGGAAACCC TGGTCATGCT GGTGCTCATT
TCAGGCGGTT TGTCTCTGAT TACCCAGGTC ATCTGGGACA GTTACATGGT CTGGCCGCCC
ACTTCGTGGT TGCCAGGCAT GACCGCGGAA GGCCTGGACG TGTTTCTCGG TCAGTTGAAC
CAGACCCTGC AACACATGAT GCTGTATGCC GCGCCCTTCA TCGCGTTGCT GCTGTTGATC
GAGGCCGCGC TGGCGATCAT CGGGCTGTAC GCGCAACAGC TGAACGTCTC GATTCTGGCC
ATGCCGGCCA AAAGCATGGC CGGTATCGCC TTTCTGCTGG TCTACCTGCC GACGCTGCTG
GAATTGGGCA CCGGCGAATT GTCGAAGCTG GCTGATCTCA AGTCGATACT GGGCTTTGTG
GTGCAGGTGC CGTGA
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| Protein sequence | MPLDAQNFFD LILGMGLAMA RLVPCMLLVP AFCFKYLKGP LRYAVVAVVA MIPAPGISRA
LTSLNDDWFA IGGLLLKEVV LGTLLGMLLY APFWMFASVG ALLDSQRGAL SGGQINPSLG
PDATPLGELF QETLVMLVLI SGGLSLITQV IWDSYMVWPP TSWLPGMTAE GLDVFLGQLN
QTLQHMMLYA APFIALLLLI EAALAIIGLY AQQLNVSILA MPAKSMAGIA FLLVYLPTLL
ELGTGELSKL ADLKSILGFV VQVP
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