| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1378 |
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| Symbol | hrpH |
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| ID | 1183014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1519724 |
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| End bp | 1521211 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392750 |
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| Product | membrane-bound lytic murein transglycosylase D |
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| Protein accession | NP_791205 |
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| Protein GI | 28868586 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCCG TCGCCTTCCC CGTATCGAGC CCACGCTTGC TGGCTCGCGC TGTTCAAATC
GCAGTCCTCG CTATGGGCGC CTTGTGTGTG GGCTGCCAGT CTGTGGACTA TTCGCCGCCG
CGTCAGGACC GTCCGCCGCG GCTGGTGTCG GGGCTGGTCT ATTGGGGGGG AGATGATAAG
GAAGGTTCGC GGGCTGCAGA CAAAATCTCC GATCTGCCTG TTTATAACGG CGAGGACGTG
TGGCAGCGGG TTGCCCAGCG CTGCAGGCTG GTCGATGGCC AAGGCATGAA TGAGCGTATC
GCTCGCCAGC GCGACTGGTT GCTGAGCAAT CGCGGATTTA TCACGGGAGC CAGTGTCCGG
GCCAGCCCTT ATCTGCATTT TATTGTCGAG CGCCTGGACG AGCGCAACAT GCCGCTGGAG
CTGGCACTGC TGCCGATGAT CGAAAGCTCT TATAACCCCA TGGCCAACTC TCCGGCCGCT
GCGGCAGGTT TGTGGCAATT CATTCCATCC ACGGGGCGCA GCTTCAATCT GCATCAAAGC
GCGACCTACG ACGCTCGCCG TGACGTGGTG GCCTCCAGCA AGGCGGCGAT GGATTACCTG
ACCCGCTTGC ATGATCAGTT CAATAATGAC TGGCTGCTGG CGCTGGCCGC CTATAACGCG
GGGGAGGGCA CCGTCGGTCG GGCGATTGAG GCCAACCGAC GGCGTGGTCT GCCTGTGGAC
TACTGGAATC TGAATTTACC CAAGGAAACC CAGGATTACG TGCCCAGACT GTTGGCGCTC
TCAATGGTTG TGCGCAACCC CAATGCCTAC GGTGTGAAAC TGACCCCGGT CGCCAACACG
CCGTATTTTG ACGTAGTCGA GCTTAACCAT GCCGTAGACC TGACCCAGCT CGCGGCCACG
GCGGGTGTGG ATGAGGGCCA GTTGTTGCGG CTGAACTCGG CATTCCTGCG CAAAAAGACC
TTCGATGGAC CGGGACGTCT GCTGATACCT AAAACCCAGA ATCGCGTGCT CACGACCAGC
ATCGCGCGCA TTACCGGTGA GTCCCCGGTG ACTGCCAGCA TCCCGCTGGT CACCCCTTCA
GCCATTGTGA AACGGGCGGC TGAGCGTCTG CCCGCGCCCG CGCCTGTGGC TGAGCGTCCA
GTGCGCGTTG CAGAGCGTCC GCCGCTGCCC AAGCCCGTGC AGTCGGCCCA GTTAGCCGAG
AACCTGCCTT CGCCCAAAAC GGCTCAGCCG TTGCCGGTGG CTCAGCAGCC CACTGCGCCT
GAGGCGTTAC AGCCAGCTCC TGCAGCTGAA TCAGCGCCGG CGGTAGAGAT CGCCCAATCC
GCACCTGTTG TGGAACCTGA TCCGCTTACA AACCGGATAC AGTTGCCCCG CATCAGGGAT
GACCGTTCGT CGCCTCGCAA GCGTGATGAC GACGAGTATC GCAGCGGTCC GCGCGAGCTG
CCTACGGGGC CGCGCGTCGT GGTTTTTGCC AGTGATCCAC GCCAATAA
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| Protein sequence | MPAVAFPVSS PRLLARAVQI AVLAMGALCV GCQSVDYSPP RQDRPPRLVS GLVYWGGDDK
EGSRAADKIS DLPVYNGEDV WQRVAQRCRL VDGQGMNERI ARQRDWLLSN RGFITGASVR
ASPYLHFIVE RLDERNMPLE LALLPMIESS YNPMANSPAA AAGLWQFIPS TGRSFNLHQS
ATYDARRDVV ASSKAAMDYL TRLHDQFNND WLLALAAYNA GEGTVGRAIE ANRRRGLPVD
YWNLNLPKET QDYVPRLLAL SMVVRNPNAY GVKLTPVANT PYFDVVELNH AVDLTQLAAT
AGVDEGQLLR LNSAFLRKKT FDGPGRLLIP KTQNRVLTTS IARITGESPV TASIPLVTPS
AIVKRAAERL PAPAPVAERP VRVAERPPLP KPVQSAQLAE NLPSPKTAQP LPVAQQPTAP
EALQPAPAAE SAPAVEIAQS APVVEPDPLT NRIQLPRIRD DRSSPRKRDD DEYRSGPREL
PTGPRVVVFA SDPRQ
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