| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1329 |
|---|
| Symbol | cyoE |
|---|
| ID | 1182965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1459154 |
|---|
| End bp | 1460041 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637392701 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | NP_791156 |
|---|
| Protein GI | 28868537 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGA AGCACTTTAT CCAAATCACC AAGCCGGGGA TCATTTTCGG TAACGTGCTT
TCGGTGGCAG GTGGCTTTTT TCTGGCTTCC AAGGGAAATA TCGACTTCGG CGTGTTCCTC
GCTGCGGTAA TCGGTACTTC CCTGGTCGTT GCGTCCGGTT GCGTGTTCAA CAACTGCATC
GATCGCGATA TCGATCAGCG AATGGAAAGG ACCCGTAACC GGGTCCTGGT GCAGGGTCTG
GTTTCACTGA AACTGGCCCT GCTCTACGCC ACCCTGTTGG GTATTGCAGG TGTCGCCCTG
CTGTACACCG AGGCCAATCC ACTGGCTGCA CTGTTTGCAG TGATCGGGTT TGTGATCTAC
GTCGGCTTCT ACAGCCTGTA CCTCAAGCGC AGATCCGTTC ATGGCACGCT CGTTGGCAGC
CTGTCGGGGG CAATGCCTCC GGTTATCGGC TACTGCGCAG TGAGCAACAG CTTCGACTTT
GCGGCCCTGA CGCTACTGGT GATGTTCAGC CTGTGGCAGA TGCCGCATTC GTATGCAATC
GCCATCTTCC GTTTCAATGA CTATCGTGCG GCGAAGATTC CAGTTCTACC GGTTCAGCGC
GGCATTCTGG TCACCAAGCG CCACATCCTG CTCTACATCC TGGCGTTCCT CGTGGCGACC
CTGATGTTGA CCGTAGGTGG TTATGCGGGC CTCAACTACC TGGCTGTTGC AGCAGGCATG
GGCATGTACT GGTTGTACAT GGCCTGGAAG GGCTATAAGG CCGTTGACGA TACGGTCTGG
GCTCGCAAGC TGTTCGTGTT CTCCATCTTC ACCATCACTG CCCTGAGCGT AATGATGTCG
GTGGACTTTC AGGTGACAAA AGAGTTGTTG GTGACGTACG CCTTCTGA
|
|---|
| Protein sequence | MSLKHFIQIT KPGIIFGNVL SVAGGFFLAS KGNIDFGVFL AAVIGTSLVV ASGCVFNNCI
DRDIDQRMER TRNRVLVQGL VSLKLALLYA TLLGIAGVAL LYTEANPLAA LFAVIGFVIY
VGFYSLYLKR RSVHGTLVGS LSGAMPPVIG YCAVSNSFDF AALTLLVMFS LWQMPHSYAI
AIFRFNDYRA AKIPVLPVQR GILVTKRHIL LYILAFLVAT LMLTVGGYAG LNYLAVAAGM
GMYWLYMAWK GYKAVDDTVW ARKLFVFSIF TITALSVMMS VDFQVTKELL VTYAF
|
|---|
| |