| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1308 |
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| Symbol | |
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| ID | 1182944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1437432 |
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| End bp | 1440536 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637392682 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | NP_791137 |
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| Protein GI | 28868518 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.582807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGGCC GCGGTTCGGT CTCGGCATGG TGCATCGACC ACCCGGTCGC CACGCTGCTG
TTGACCTTCG CGATAGTGCT GCTGGGGGTC ATTGCCTTTC CGCGCCTGCC AATCGCGCCG
TTGCCGGAAG CGGAATTCCC GACCATTCAG GTGACCGCGC AACTTCCCGG TGCCAGCCCG
GAAACCATGG CGTCCTCGGT TGCGACGCCG CTGGAGGTGC AGTTCAGCGC GATACCCGGC
ATGACCCAGA TGACGTCGAG CAGCGCGCTG GGGTCTACCA ACCTGACCCT GCAATTTACC
CTCAACAAGA GCATCGACAC CGCCGCCCAG GAAGTCCAGG CAGCGATCAA CACGGCGGCA
GGACGCCTGC CCGCCGACAT GCCCAGCCTG CCGACCTGGC GCAAGGTCAA CCCGGCGGAC
AGCCCGGTGC TGATTCTGAG CGTCAGCTCC AGCCTGATGC CCGGCACCGA ACTCAGTGAC
GTCACCGAAA CCATTCTGGC GCGCCAGCTC AGCCAGATCG AGGGCGTAGG CCAAGTGTTC
ATCACCGGCC AGCAACGCCC GGCAATCCGC GTGCAGGCCG CCCCGGAAAA ACTCGCGGCG
CTGGGCCTGA CCCTGGCAGA CATCCGCCTC GCTGTGCAGC AGACCAGCCT TAACCTGGCC
AAAGGTGCCT TGTACGGCAA GGACAGTATT TCGACCCTCT CTTCCAACGA CCAGTTATTC
AAACCGCAGG ACTACGCGCA ACTGATCGTT TCCTACAAGA ACGGCGCTCC CGTCCAGCTC
AAGGACGTCG CACGAGTGGT CGCAGGCTCG GAAAACGCCT ACGTCAAGGC GTGGTCCGGC
GACCAGCAGG GTGTCAACAT CGCCATCTTC CGTCAGCCCG GCGCCAACAT TGTCGAGACC
GTGGACCGCA TTCAGCGCGA ACTACCACGC TTGCAGGAAA TGCTCCCGGC CACTGTCGAT
GTGTCGGTGC TCAACGACCG TACCCGGACC ATTCGTGCCT CGCTGCACGA AGTGGAAATG
ACCCTGCTGA TCGCGGTGTT GCTGGTGGTC GCGGTCATGG CGCTGTTTCT GCGCCAGCTC
TCGGCCACAC TGATCGTCAG CGCGGTGCTC GGGGTGTCGC TGATTGCCAG CTTCGCGATG
ATGTACCTGT TCGGCTTCAG CCTGAACAAC CTGACGCTGG TGGCTATCGT GGTTGCGGTC
GGGTTCGTGG TGGACGACGC AATCGTGGTG GTCGAGAACA TCCACCGCCA TCTCGAAGCC
GGACAAGGCA TGCGTGAGGC GGCCATAAAA GGCTCGGGGG AGATCGGCTT TACCGTCGTG
TCGATCAGCT TCTCGCTGTT GGCCGCGTTC ATTCCGCTGC TGTTCATGGG CGGCGTGGTC
GGGCGGCTGT TCAAGGAGTT TGCGCTGACG GCGACAGCGA CCATCCTGAT CTCGGTCGTC
GTCTCCCTGA CCCTGGCCCC GACCCTGGCG GCCCTGTTCA TGCGTGCCCC CACTCACAAC
CCGAACCAAA AGCCAGGGTT TGGCGAACGA TTACTGGCCT CCTACGAGCG AGGCTTGCGC
AAGGCGCTGG CCCATCAGCG GCTGATGCTC GGCGTGTTCG GCTTGACCCT GGTGCTGGCA
GTTGTCGGTT ACGTGCTCAT ACCCAAAGGC TTCTTTCCGG TTCAGGACAC CGCTTTTGCA
CTCGGGACCA CCGAAGCCGC TGCCGATATT TCCTACCCGG ACATGGTCGA AAAACACCTG
CAACTGGCGA AAATCGTCGG CGCGGACCCT GCGGTGCTGG CGTTCTCTCA TTCGGTGGGG
GTGTCGGGCA GTAACCAGAC CATCGCCAAC GGCCGTTTCT GGATCTCGCT CAAGCCGCAG
TCCGAACGTG ATGTGTCAGT CAGCGAGTTC ATCGACCGCC TGCGCCCCAA ACTGGCCAGG
GTGCCGGGCA TTGTTCTGTA CCTGCGCGCC GGGCAGGACA TCAACCTGAG CTCCGGTCCG
AGCCGCAGTC AGTATCAGTA CGTGCTCAAA AGCAATGACG GCGCGCTGCT CAACACCTGG
ACGCAACGCC TGACCGAAAA GCTGCGCAGC AACCCGGCGT TCCGCGACAT GTCCAACGAC
TTGCAACTGG GCGGCAGCGT GACGCACATC GATATCGATC GCAGCGCCGC AGCGCGCTTC
GGCCTCACCA CGGCCGATGT CGATCAGGCG CTGTACGACG CTTTTGGCCA ACGGCAGATC
AGCGAATATC AGACCGAGGT CAACCAGTAC AAGGTCATCC TCGAACTGGA TGCCCAGCAG
CGCGGCAAGG CCGAAAGCCT GGCGTACTTC TATCTGCGCT CACCGCTGAC CAACGAAATG
GTGCCACTGT CGGCGCTGGC CAAGGTCGGC GCGCCACGCA TGGGACCGCT TTCGATCAGC
CACGACGGCA TGTTCCCGGC GGCCAACCTG TCATTCAACC TCGCTCCCGG GGTCGCCTTG
GGCGACGCGG TGCGCATGCT TGATCAGGCC AAGATCGAGA TCGGCATGCC GGCCGCGATC
ATCGGCAGCT TTCAGGGTGC GGCGCAGGCG TTTCAGAGTT CGCTGGCCAA CCAGCCGTGG
CTGATTCTCG CGGCGCTGGT GGCGGTGTAC ATCATTCTGG GTGTGCTTTA CGAAAGCTTC
GTGCACCCGC TGACCATTAT TTCCACCCTG CCTTCAGCGG GTATCGGCGC GCTGTTGCTG
CTGTGGATGA TGGGCCAGGA CTTCTCGATC ATGGCCCTGA TCGGTGTGGT GCTGCTGATC
GGCATCGTCA AGAAGAACGG CATTCTGCTG GTGGACTTCG CCTTGCAGGC GCAGCGCGAA
CAGGGCCTCA CTCCGCAGGA AGCGATTTAT GAGGCCTGCA TCACGCGCTT TAGACCGATT
ATCATGACCA CCCTCGCCGC GCTGCTGGGC GCGCTGCCGC TGATGCTCGG TTTCGGCGTC
GGTGCCGAGT TGCGCCAGCC GCTGGGGATC GCCGTGGTCG GCGGCCTGCT GGTCAGCCAG
ATGCTGACGC TGTTCACCAC GCCGGTCATC TACCTGCAAC TGGAGCGGTT GTTTCATCGC
CGCCACCCGG CACCCGGCGC ACCGGCGCTG ACCCTTCACA AGTGA
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| Protein sequence | MNGRGSVSAW CIDHPVATLL LTFAIVLLGV IAFPRLPIAP LPEAEFPTIQ VTAQLPGASP
ETMASSVATP LEVQFSAIPG MTQMTSSSAL GSTNLTLQFT LNKSIDTAAQ EVQAAINTAA
GRLPADMPSL PTWRKVNPAD SPVLILSVSS SLMPGTELSD VTETILARQL SQIEGVGQVF
ITGQQRPAIR VQAAPEKLAA LGLTLADIRL AVQQTSLNLA KGALYGKDSI STLSSNDQLF
KPQDYAQLIV SYKNGAPVQL KDVARVVAGS ENAYVKAWSG DQQGVNIAIF RQPGANIVET
VDRIQRELPR LQEMLPATVD VSVLNDRTRT IRASLHEVEM TLLIAVLLVV AVMALFLRQL
SATLIVSAVL GVSLIASFAM MYLFGFSLNN LTLVAIVVAV GFVVDDAIVV VENIHRHLEA
GQGMREAAIK GSGEIGFTVV SISFSLLAAF IPLLFMGGVV GRLFKEFALT ATATILISVV
VSLTLAPTLA ALFMRAPTHN PNQKPGFGER LLASYERGLR KALAHQRLML GVFGLTLVLA
VVGYVLIPKG FFPVQDTAFA LGTTEAAADI SYPDMVEKHL QLAKIVGADP AVLAFSHSVG
VSGSNQTIAN GRFWISLKPQ SERDVSVSEF IDRLRPKLAR VPGIVLYLRA GQDINLSSGP
SRSQYQYVLK SNDGALLNTW TQRLTEKLRS NPAFRDMSND LQLGGSVTHI DIDRSAAARF
GLTTADVDQA LYDAFGQRQI SEYQTEVNQY KVILELDAQQ RGKAESLAYF YLRSPLTNEM
VPLSALAKVG APRMGPLSIS HDGMFPAANL SFNLAPGVAL GDAVRMLDQA KIEIGMPAAI
IGSFQGAAQA FQSSLANQPW LILAALVAVY IILGVLYESF VHPLTIISTL PSAGIGALLL
LWMMGQDFSI MALIGVVLLI GIVKKNGILL VDFALQAQRE QGLTPQEAIY EACITRFRPI
IMTTLAALLG ALPLMLGFGV GAELRQPLGI AVVGGLLVSQ MLTLFTTPVI YLQLERLFHR
RHPAPGAPAL TLHK
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