Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1189 |
Symbol | |
ID | 1182825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1301655 |
End bp | 1303208 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637392566 |
Product | ISPsy5, transposase |
Protein accession | NP_791021 |
Protein GI | 28868402 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3436] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.633516 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACCAT TGCCCGACAA CCTTCCTGAC GATCCCGTAT TGCTCAAACA GATGCTGCTT GAGAGCTACG AAGCACGCTC GCGCGAACAG GAAGTTAAAG ACGCCTACGC CACTCACATC GTTGATCTCA AAGAGCAGAT CAAGCTGCTG CGTGACCGTA TTTTTGGTCG AAAGTCCGAA CAAACCGTCG AGCCTAATAC CCCTCAACTT GCCTTGTTCA ATGAACCTGA AAGCGAGCCT ATGCTCCCGG TCGGCGATGC TGATGAGGAA GTAGTTGCTC CTGCGCCACG CCGTGGCAAG CGCAAGCCAC TGTCGGCTGA TCTGCCGCGC ATTGAAGTCA TCCACGAGCT GCCCGAACAC GAACTGACCT GTGCCTGCGG TTGCCGCAAG CATGTCGTCA GCGAGGAAAC CAGCGAGCAA CTGGATATCG TGCCGATGCA GATTCGGGTG ATCAAACACA TCCGCAAAGT CTACGGCTGT CGTGGCTGTG AGTCGGCACC GGTCACAGCC GGCAAGCCTG CGCAGTTGAT TGAAAAGAGC ATGGCCAGCC CCAGCGTGTT GGCCATGCTG CTGACCACCA AGTATGTCGA CGGCTTGCCG CTGCATCGTT TTGAAACGGT GCTAAGCCGA CATGGCATAG AAATCCCGCG TCAAACGTTG GCCCGCTGGA TTATCCAGTG CGGCGAACAT TTGCAGCCGC TGTTAAATCT GATGCGTGAT CGATTGCTGG AAAGCCCGGT CATCCACTGT GACGAAACCC GCGTTCAGGT ACTGAAAGAA CCAGATCGAG ACCCGACCAG CCAATCCTGG ATGTGGGTAC AGGCCAGCGG GCCTCCAGAT CATAAAGTCG TATTGTTCGA CTACACTTCC AGCCGCGCGC AGGACGTACC GTTACGGCTG CTGGAAAGTT ATCGCGGCTA TGTGATGACT GATGATTACG CGGGCTATAA CGCGCTGGCG TTACAACCGG GCGTGGAGCG CTTGGCGTGT ATGGCCCATG CGCGGCGCAA ATTTGTCGAA GCACAAAAAG TGCAACCTAA GGGCAAGACC GGGCGTGCCG ATATCGCGCT GACGATGATC AATAAGCTGT ACGGTATCGA GCGCGAATTG AAAGACGGCA GCGACGAACA GCGCTTTACC GGTCGGCAGG AGAAAAGCCT GCCAATCTTG GCTCAGTTGA AAAGCTGGCT GGATAAAACT CAGTCCCACG TGACGCCGCA AAGCGTGCTG GGCAAGGCAG TTGGTTATCT GGCGAATAAC TGGAGTCGGC TGAAGCGTTA CGTGGAAGCC GGCTTTTTAC CGATCGACAA CAACCCGGCA GAGCGCGCAA TAAAGCCGTT TGTTATTGGG CGCAAAGCCT GGCTGTTCAG CGACACGCCT AAAGGCGCCA CCGCCAGTGC ACAGATCTAT AGCTTGGTCG AGACCGCCAA GGTCAACGGC CAGGAGCCCT ATACGTGGCT GCGCCACGTA CTGGAGAGGT TGCCACTTGC GCAGTCGGTG GCCGACTATG AGGCGTTGCT GCCGTGGAAC TGCTCACCGG AAATGCCAAG ATAA
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Protein sequence | MRPLPDNLPD DPVLLKQMLL ESYEARSREQ EVKDAYATHI VDLKEQIKLL RDRIFGRKSE QTVEPNTPQL ALFNEPESEP MLPVGDADEE VVAPAPRRGK RKPLSADLPR IEVIHELPEH ELTCACGCRK HVVSEETSEQ LDIVPMQIRV IKHIRKVYGC RGCESAPVTA GKPAQLIEKS MASPSVLAML LTTKYVDGLP LHRFETVLSR HGIEIPRQTL ARWIIQCGEH LQPLLNLMRD RLLESPVIHC DETRVQVLKE PDRDPTSQSW MWVQASGPPD HKVVLFDYTS SRAQDVPLRL LESYRGYVMT DDYAGYNALA LQPGVERLAC MAHARRKFVE AQKVQPKGKT GRADIALTMI NKLYGIEREL KDGSDEQRFT GRQEKSLPIL AQLKSWLDKT QSHVTPQSVL GKAVGYLANN WSRLKRYVEA GFLPIDNNPA ERAIKPFVIG RKAWLFSDTP KGATASAQIY SLVETAKVNG QEPYTWLRHV LERLPLAQSV ADYEALLPWN CSPEMPR
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