| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1089 |
|---|
| Symbol | |
|---|
| ID | 1182724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1195573 |
|---|
| End bp | 1198695 |
|---|
| Gene Length | 3123 bp |
|---|
| Protein Length | 1040 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637392467 |
|---|
| Product | type I restriction-modification enzyme, R subunit, putative |
|---|
| Protein accession | NP_790923 |
|---|
| Protein GI | 28868304 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.340753 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG ACCAATTGGA ACAGGAAACC CTCGGCTGGC TGGCAGAAAC GGGCTACAGC
CATGTCTACG GGCCGACTAT CGCCTATGAC GGCGAGAGCC CGGAACGTGA CAACTACCGT
CAGGTGCTCC TGGTCGAGCG CTTGCGCAGC GCTATAGTCA GGCTTAACCC CAAGGTACCG
CTTGCAGCAC GTGAGGATGC CCTCAAGCAG GTGCAGGAAC TGGGTCTGCC GGTACAGCTG
TCGGCCAACC GCCTGTTTCA TCGTCTGTTG GTCAGTGGCG TACCGGTGCA GTATCAAAAG
GACGGTGAGA CCCGTGGCGA CTTCGTGCGC TTGATCGACT GGGTCGAGGT GAAGGCCAAT
GACTGGCTGG CCATCAATCA GTTCAGCATC CAAGGGCCAA AACATACCCG GCGTCCAGAC
ATCATCCTGT TCGTCAACGG CCTGCCATTG GTGCTGCTGG AGCTGAAAAA CCCGGCCGAT
GTAAAAGCCG ACCTGGGCAA GGCCTTCGAT CAGATCCAGA CCTACAAGGA GCAGATCCCG
GATCTGTTCC AGTACAACGA AATCCTGGTG ATTTCTGACG GCAGTGAAGC GCGCATGGGC
TCGTTGTCGG CTGATGTTGA ACGCTTCATG AACTGGCGCA CCATCGACGG CAAAGATCTC
GACCCACTGG GTCAGTTCAA TGAACTGGAG ACCTTGGTGC GCGGTGCTCT GGCACCGCCG
ATGCTGCTCG ATTACCTGCG CTACTTCGTG CTGTTTGAGG ACGACGGCCG ACTGGTGAAG
AAGATTGCCG GCTATCACCA GTTCCACGCC GTACGCGCCG CCATTGGCCA AGTGGTCAGT
GCCTCGCGTC CCGGTGGTAC CCATAAAGGC GGCGTGGTCT GGCATACCCA GGGTTCGGGC
AAGAGCATCA CCATGACCTG CTTCGCCGCC CGGGTGATGC AGGACGCGGC AATGGAGAAC
CCGACCATCG TGGTGATCAC CGATCGCAAC GACCTGGACG GCCAGTTGTT CGGGGTGTTC
TCGCTGTCCC ATGATCTGTT GCGTGAACAG CCCTTTCAGG TGGAATCGCG CGGTGACTTG
CGCAGCAAAC TGACCAATCG GCCGAGTGGC GGCATTGTCT TTGCCACAAT CCAGAAATTC
ATGCCGGGTG CGGATGAGGA CATCTTTCCG ATCTTGTCCG ACCGCTCCAA TATCGTGGTC
ATTGCTGACG AAGCACATCG CACCCAATAC GGCTTTGGTG CTGAGTTGAA AGTCTCAGAA
GCGACGGCTG ACACCGCGAG CCAGACCCGT TACCAGGTCG GGTATGCCCA GCACCTGCGC
GATGCACTAC CGAACGCGAC CTTTGTGGCT TTCACCGGCA CACCCGTCTC CAGTGAAGAC
CGCGACACCC GTTCGGTCTT CGGTGAATAC ATTCACATTT ACGACATGCA GCAGGCCACC
GAAGATGGCG CAACGGTCGC CATCTATTAC GAATCGCGAC TGGCCAAGCT GTCCTTGAAA
GATAGCGAGC TACCCGCGAT TGATGATCAG TTCGATGAAC TGGCCGAAGA TGAAGAGGAC
GACCAGCAGT CACGGTTAAA AAGCCGTTGG GCCGCGCTAG AAAAAGTCGT CGGAGCCGAA
CCACGTATCC GCAACGTTGC AGCTGATCTG GTCAAACATT CGGAGGAGCG TAATCAGGGC
CTGGTAAGCA TGGGCCAGAT GCCTGGCAAG GCCATGATCG TTGCCATGAG CCGGGAGATC
TGCGTGCACC TGTACAACGA GATCACCGCC CTGCGCCCGG AGTGGCATGA CGAAGATCCA
GAAAAAGGCG CAATCAAGGT CATCATGACG GGTAGCGCCT CGGACAAGGC TTCGCTGCGT
CCACACATCT ACTCAGGGCA GATCAAGAGG CGCCTGGAAA AACGCTTTAA GGATCCGCTT
GATCCACTCA AGCTAGTAAT CGTCCGTGAC ATGTGGCTGA CCGGCTTTGA TGCTCCCTGC
GTTCACACGC TGTACGTCGA CAAGCCCATG AAGGGCCATA ACCTGATGCA AGCCATCGCC
CGGGTCAACC GCGTATTCAA GGACAAGCAG GGCGGCCTGG TGGTGGATTA CATCGGAATC
GCCAATGAGC TGAAAGCTGC GCTCAAGGAG TACACCGGCA GCAAGGGCAA AGGCCGACCG
ACCGTGGATG CCCACGAAGC CTATTCGGTG CTGGAGGAGA AGCTCGACGT CCTGCGCAGT
CTGCTGCACG GCTTCGATTG CAGCGATTTC CTCACCGGGG GCCACAAGCT GTTGGCCGGG
GCCGCTAACC ATGTGTTGAG TCTGGAAGAT GGCAAGAAGC GCTTTGCCGA CACCGCACTG
GCCATGAGCA AAGCCTTTAC CTTGTGCTGC ACCTTGGATG AAGCCAAGGC CGTCCGCGAG
GAAGTGGCGT TCTTCCAGGC AATCAAGGTG ATCTTGATCA AGCGTGAAGT CAGCCAGCAG
AAAAAGACCG ACGAAGAACG CGAGCTAGTC ATCCGCCAGA TCATCGGCAA TGCCGTGGTC
TCTGGCGACG TGGTGGACAT TTTTCAGGCC GTGGGCCTGG ATAAACCAAA TATCGGCCTA
CTCGACGATA CGTTTCTCGC CGAGGTGCGG AATCTTCCCG AGAAGAATCT GGCAGTGGAG
CTGCTGGAGC GTTTGCTCGA AGATGAGATC AAGAGCCATT ACAGCACCAA TCTGGCCCAG
GAGAAGAAGT TCTCCGAGCT ACTGGTCAAT GTGATCAAAC GCTATCAAAA CCGCTCGATT
GAAACCGCCC AGGTCATCGA AGAACTGATC GGAATGGCCA AGAAGTTCGC AGCCGCCAGT
CAGCGTGGCG ATGCGTTGGG GCTCAACGAT GACGAACTGG CGTTTTACGA TGCCTTGGCC
AACAACGAAG CATCGGTACG CGAACTGGGC CACGAGATCC TGGCCAAAAT TGCCCACGAG
CTGACGGCCA GTCTGCGGGC CAACGTCAGT GTGGACTGGA ACAGCCGCGA AAGTGTGAGG
GCCAAACTGC GCATCCTGGT GCGACGCATC TTGCGCAAAT ACAAGTACCC GCCGGATCAC
GCGGAGGAAG CGGCTCAGCT CATCCTCAAT CAGGCGGAAA CTCTTTGTGA GGCATGGTTG
TAG
|
|---|
| Protein sequence | MTEDQLEQET LGWLAETGYS HVYGPTIAYD GESPERDNYR QVLLVERLRS AIVRLNPKVP
LAAREDALKQ VQELGLPVQL SANRLFHRLL VSGVPVQYQK DGETRGDFVR LIDWVEVKAN
DWLAINQFSI QGPKHTRRPD IILFVNGLPL VLLELKNPAD VKADLGKAFD QIQTYKEQIP
DLFQYNEILV ISDGSEARMG SLSADVERFM NWRTIDGKDL DPLGQFNELE TLVRGALAPP
MLLDYLRYFV LFEDDGRLVK KIAGYHQFHA VRAAIGQVVS ASRPGGTHKG GVVWHTQGSG
KSITMTCFAA RVMQDAAMEN PTIVVITDRN DLDGQLFGVF SLSHDLLREQ PFQVESRGDL
RSKLTNRPSG GIVFATIQKF MPGADEDIFP ILSDRSNIVV IADEAHRTQY GFGAELKVSE
ATADTASQTR YQVGYAQHLR DALPNATFVA FTGTPVSSED RDTRSVFGEY IHIYDMQQAT
EDGATVAIYY ESRLAKLSLK DSELPAIDDQ FDELAEDEED DQQSRLKSRW AALEKVVGAE
PRIRNVAADL VKHSEERNQG LVSMGQMPGK AMIVAMSREI CVHLYNEITA LRPEWHDEDP
EKGAIKVIMT GSASDKASLR PHIYSGQIKR RLEKRFKDPL DPLKLVIVRD MWLTGFDAPC
VHTLYVDKPM KGHNLMQAIA RVNRVFKDKQ GGLVVDYIGI ANELKAALKE YTGSKGKGRP
TVDAHEAYSV LEEKLDVLRS LLHGFDCSDF LTGGHKLLAG AANHVLSLED GKKRFADTAL
AMSKAFTLCC TLDEAKAVRE EVAFFQAIKV ILIKREVSQQ KKTDEERELV IRQIIGNAVV
SGDVVDIFQA VGLDKPNIGL LDDTFLAEVR NLPEKNLAVE LLERLLEDEI KSHYSTNLAQ
EKKFSELLVN VIKRYQNRSI ETAQVIEELI GMAKKFAAAS QRGDALGLND DELAFYDALA
NNEASVRELG HEILAKIAHE LTASLRANVS VDWNSRESVR AKLRILVRRI LRKYKYPPDH
AEEAAQLILN QAETLCEAWL
|
|---|
| |