| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1051 |
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| Symbol | dctP |
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| ID | 1182685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1148160 |
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| End bp | 1149185 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392430 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | NP_790887 |
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| Protein GI | 28868268 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.651604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTCA AACGCAAGCT TCTCATCGCG GCACTCCCGC TGGCCTTCTG CATGTCGGGC
CTGGCCCAGG CAGACGTCAA AATCAAGTTC GCCGAGGTTC ATCCCGCAGG CTACGCGCCG
GTTGTGGCCG AACAGAACAT GGGCAAGAAG CTCGAGGAGC AATCCAAGGG CGAGATCAGC
TTCAAGATGT ACGCCGGCGG CGTGCTTGGC TCCGAGAAGG AAGTGGTCGA GCAAGTGCAG
AGCGGTGCCG TGCAGATGAC CCGCGTCAGC CTCGGCATCG TCGGCCCGGT AGTGCCGGAC
GTCAACGTCT TCAACCTGCC GTTCGTGTTC CGCGATCAGG CACATATGCG CACGATTATC
GACGGTGAGA TCGGCCAGGA AATTCTCGAC AAGATCACCA ACTCGCAATT CAACATGGTC
GCGCTGGCCT GGATGGATGG CGGCACCCGC AACCTGTACA CCAAAAAACC GGTACGGCAG
ATTGCTGACC TCAAAGGCAT GAAAATCCGC GTTCAAGGCA ACCCGGTGTT CATCGAAACC
ATCAACGACA TGGGCGGCAA CGGCATCGCC ATGGCTACCG GCGAGATCTT CAGCGCCCTG
CAGACCGGCG TCATCGATGG CGCTGAAAAC AACCCGCCCA CCTACTTCCA GCACAACCAC
TACCAGAACG CCAAATTCTT CACGATGACC GAGCACTTGA TCCTGCCTGA GCCGATCGTG
ATGTCGAAAG CCACCTGGGA AAAGCTCAAG CCCGAGCAAC AGGCGCTGGT GAAAAAGCTC
GCGCGTGAAG CGCAGATGGA AGAGCGCGTG TTGTGGGACA AGTCGTCAGC CGATGCCGAG
GTCAAGCTCA AGGCCGCAGG CGTGGAATTC ATCACGCTGA CACCGGAGCA GAAGAAAGCG
TTCTACGACG CTACCCAACC GGTACGTGAC AAATTCGGCG CGCCCTACAA GGACTTGATC
AGCCGCATCG AAGCGGTCCA GACCAATCCG GCGCTGGCTG CGGCCAGTTC CCAAGCGGCC
CAATAA
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| Protein sequence | MDFKRKLLIA ALPLAFCMSG LAQADVKIKF AEVHPAGYAP VVAEQNMGKK LEEQSKGEIS
FKMYAGGVLG SEKEVVEQVQ SGAVQMTRVS LGIVGPVVPD VNVFNLPFVF RDQAHMRTII
DGEIGQEILD KITNSQFNMV ALAWMDGGTR NLYTKKPVRQ IADLKGMKIR VQGNPVFIET
INDMGGNGIA MATGEIFSAL QTGVIDGAEN NPPTYFQHNH YQNAKFFTMT EHLILPEPIV
MSKATWEKLK PEQQALVKKL AREAQMEERV LWDKSSADAE VKLKAAGVEF ITLTPEQKKA
FYDATQPVRD KFGAPYKDLI SRIEAVQTNP ALAAASSQAA Q
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