| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1004 |
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| Symbol | |
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| ID | 1182638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1097150 |
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| End bp | 1098391 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637392385 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_790842 |
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| Protein GI | 28868223 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.368177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTACTG TCCCAAGTCT CTCGATGTCA AAGTCCCGGT GCAACATGCT CGCTTCAACA
CTTGATCGTC CCAGCCCTGA AGATTCGCAA ACCCTTGCCG AGGTCGAGCG AACCATTACT
TCAGGGGTCG GAGCGCTGTG CTTCAGCCGT GGCCTTGAGC GACGTTATCA AACGGAAACC
CGACTGCAAC GGCGTGAGTT TCTGACTGCG ATGGGTATCG GCGGCAGCCT GATCTATAAC
CTGTTTCTGA TCACCGACTG GTTGATTCTG CGCGATGTTT TTGTCTACGT GGCGATAGGC
CGTCTGTGCC TGATCACGCC GATGTTCATC ATCATGCTGA TCCTGGCTCG GCGCCTTGCT
TCTCGTCGGG CGATGGAGAC CACTGCTGCG GTCGCCACGG TGCTGTGCTC GCTCATGCCA
ATGGTGGTGA TGACTTACAG CGAGAGCCCG TATCAGATCT TTTATCAGTT GGGCATGCTG
CTGATCATGG TCTATTGCAC CATGATCCAG CAGTTGCCGC TGCGCCATGC CGCCGCCGCG
TTGTCCTGCA TGCTGATCAT TCAACTGGTG ACAACCTACA TTGCAGACTT CGCGGATTTC
GTCATCTGGC AGGCCAATGC CCTGCTGTTC GTCTCGACGG TCATGCTGCT GTTGATGGCT
TCCTATTTTC TGGAGCGGGC AAGCCGTCTG AGTTATCTGT TTGCACTGCG CGGACGCTTG
CTGCAAGTGC AGTTGCTGGA GTTTGCACGC ACCGATGCAC TGACGCGTCT GTTCAATCGA
CGTTATCAGG ATGAAGTGCT GACGTCGGTC TGGGAACGTG CCCGTAAAAA GCAGGCAAAC
GTGGCGATCA TTTTGCTGGA CATCGACCAC TTCAAATCCT ACAACGACAA CTACGGCCAT
CCACAGGGCG ATGTCTGCCT TAAGTTGCTC TGCAAGGCAA TCCAGCAAAG CGCAAATGAC
GGCGGTGCAG TGGCCTTCCG GTTCGGTGGT GAAGAGGTAC TGGTATTGAT GAATGCCGAT
GCCGACCAGG CCACGAAGAT GGCCGAGACC CTGAAAGCCA CGGTGGCCGC CCTCAAGCTG
CCGCACCCGG CGCTGGGCGA AGACGCGCAT GTCACCATCA GTCTTGGCGT CGCATCGGGG
ATTGCCCCGC TGATCACTTA CGATACGCTG ATCAGCGCTG CCGATAACGC GCTGTACGCC
GCCAAGCACG CCGGGCGCAA CTGTGTGTTT TGCCAGCCAT AA
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| Protein sequence | MRTVPSLSMS KSRCNMLAST LDRPSPEDSQ TLAEVERTIT SGVGALCFSR GLERRYQTET
RLQRREFLTA MGIGGSLIYN LFLITDWLIL RDVFVYVAIG RLCLITPMFI IMLILARRLA
SRRAMETTAA VATVLCSLMP MVVMTYSESP YQIFYQLGML LIMVYCTMIQ QLPLRHAAAA
LSCMLIIQLV TTYIADFADF VIWQANALLF VSTVMLLLMA SYFLERASRL SYLFALRGRL
LQVQLLEFAR TDALTRLFNR RYQDEVLTSV WERARKKQAN VAIILLDIDH FKSYNDNYGH
PQGDVCLKLL CKAIQQSAND GGAVAFRFGG EEVLVLMNAD ADQATKMAET LKATVAALKL
PHPALGEDAH VTISLGVASG IAPLITYDTL ISAADNALYA AKHAGRNCVF CQP
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