| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0834 |
|---|
| Symbol | |
|---|
| ID | 1182463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 905575 |
|---|
| End bp | 906534 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637392216 |
|---|
| Product | alcohol dehydrogenase, zinc-containing protein |
|---|
| Protein accession | NP_790679 |
|---|
| Protein GI | 28868060 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCTC CTGACGGCGT AGAAATCGAT ATCGTGCTAT CAGGTATATG CGGAACTGAT
CTGGCGGTAT TGTCGGGCCG TGAAGGTGGA GAGGTGGGCA TTATACGCGG GCACGAAGCA
GTTGGCATTA TTATCGATGT AGGTAAGGAT GTAGTACACC TACAAAAAGG GATGCGGGTG
GTGGTTGATC CCAACGAATA CTGTGGCGTT TGCGAACCTT GCCGTCTTGC TAAAACGCAC
CTATGCAATG GGGGGGTGAA CGCTGGGTTG GATATCGCAG GTGTCAACAA ACATGGAACT
TTTGCCGAGC GCTTCGTTAC TCGTGAGCGT TTTGTGTATC AATTGCCAGA CGATATGAGC
TGGGCAGCTG GTGTGTTGGT TGAGCCTGTT GCCTGCATTC TGAATAATAT AGACCAGGCG
TTCATTCGAG CGGGAGAGCG TGTGTTGATC CTAGGGTCTG GCCCTATGAG TCTGATTGCG
CAGATCGTTC TGCGCTCAAT GGGAGTTGAC ACGCTCGCCA CTGATCGAAA CACACATCGC
ATACAGTTCG GCCGCTCACA AAGTCTTGAT GTTATACATG CCGATGATCT TGAGTTGCAG
ATGCAGCACC AAGAAAAGTT TGATGTTGTT ATCGATACTG TCGGTAATCA GATCGATACA
GCTTCACGCT ACATCGGTCG CGGTGGGAGA ATTGTACTTT TTGGATTTGA TAGTGACTAT
CACTACATGC TGCCTGTAAA GTACTTCCTG GTTAACGCTA TCAGTATTAT TTCTGCTGGA
GAATACAATC AGCACTTTCC TAGAGCAATT CGTCTTGTGC AAAAACTTCC TGAGCTAGGG
CGGCTGGTAA CGCATCGCTA CGTACTAGAA AATCACTCGG AGGTTTTCGA TGCACTTCTG
AACGATGCTT CCGCCCCCAA TATAAAAAGC GTATTCACAC CAAATCTCGC TTATCTTTAA
|
|---|
| Protein sequence | MLAPDGVEID IVLSGICGTD LAVLSGREGG EVGIIRGHEA VGIIIDVGKD VVHLQKGMRV
VVDPNEYCGV CEPCRLAKTH LCNGGVNAGL DIAGVNKHGT FAERFVTRER FVYQLPDDMS
WAAGVLVEPV ACILNNIDQA FIRAGERVLI LGSGPMSLIA QIVLRSMGVD TLATDRNTHR
IQFGRSQSLD VIHADDLELQ MQHQEKFDVV IDTVGNQIDT ASRYIGRGGR IVLFGFDSDY
HYMLPVKYFL VNAISIISAG EYNQHFPRAI RLVQKLPELG RLVTHRYVLE NHSEVFDALL
NDASAPNIKS VFTPNLAYL
|
|---|
| |