| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0598 |
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| Symbol | speD |
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| ID | 1182209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 656147 |
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| End bp | 656941 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637391964 |
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| Product | S-adenosylmethionine decarboxylase proenzyme |
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| Protein accession | NP_790445 |
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| Protein GI | 28867826 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1586] S-adenosylmethionine decarboxylase |
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| TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAAAAGCA AACTCAAGCT CCACGGGTTC AATAACCTGA CAAAGACCTT GAGCTTCAAC
ATTTATGACA TCTGCTATGC GGAAACCCCG CAGGACCAGC AGGCGTACGT CGAGTACATC
AACAGTGTGT ACGACGCAGA ACGCCTGACG CGGATTCTGA CTGATGTTGT CGATATCATT
GGTGCCAACA TCCTGAACAT TGCGCGTCAG GATTACGATC CACAAGGTGC CAGTGTGACC
ATTCTGATCT CCGAGCAGCC GGTGACGCCT ACCGAAAGCC AGATCGAAGA GTCGCCAGGT
CCATTGCCGG AAACCATCCT GGCCCACCTG GACAAGAGCC ACATCACGGT GCATACCTAT
CCGGAAATTC ACCCGGTAGA CGGTATTGCA ACGTTCCGCG TAGACATCGA CGTGTCGACC
TGTGGCGTTA TTTCACCGCT TAAGGCGCTG AACTACCTGA TTCACAAGTT CGAGTCGGAC
ATCGTGACCG TCGATTATCG CGTGCGCGGC TTTACCCGTG ACGTGGAAGG CAAAAAGCAC
TTCATCGATC ACGAGATCAA CTCGATCCAG AATTACCTCT CCGAAGACAC GCGCAACGGT
TACCAGATGA CCGATGTGAA CGTGTATCAG GAAAACCTGT TCCATACCAA AATGCTGCTC
AAGCAGTTCG AACTGGATAA CTACCTGTTT GGCGACGCTA CCAGCAACTT GTCTGCCGAA
CAGCGTGAGC AAGTGACCGC CAAGGTCAAA CACGAAATGC TGGAAATCTT CTACGGTCGT
AACGTAGCGG TGTAA
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| Protein sequence | MKSKLKLHGF NNLTKTLSFN IYDICYAETP QDQQAYVEYI NSVYDAERLT RILTDVVDII
GANILNIARQ DYDPQGASVT ILISEQPVTP TESQIEESPG PLPETILAHL DKSHITVHTY
PEIHPVDGIA TFRVDIDVST CGVISPLKAL NYLIHKFESD IVTVDYRVRG FTRDVEGKKH
FIDHEINSIQ NYLSEDTRNG YQMTDVNVYQ ENLFHTKMLL KQFELDNYLF GDATSNLSAE
QREQVTAKVK HEMLEIFYGR NVAV
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