| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0413 |
|---|
| Symbol | |
|---|
| ID | 1182022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 460408 |
|---|
| End bp | 461172 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637391781 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_790262 |
|---|
| Protein GI | 28867643 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACC CGGACCTGGG CGCGATTGCA CGTCTCATCG CACAGGATCC CGGCTTGTCC
GGGGCGCTGC TGAAGATTGT CAATTCTGCG CATTACGGAC TGTCCAACAA GATCGCCTCG
ATCGACAAGG CGGTGAATCT GTTGGGCAGT CGGACCGTTA TCAACCTGAT CAACGCGCAG
TCGATCAGGG GCGAGATGAG CGATGAAACC ATCGTGGCAC TCAACCGCTT CTGGGATACC
GCTCAGGATG TCGCGATGAC CAGTCTGACG CTGGCCAAGC GCATCGGCTC GCAGACGGTG
GATGAATCCT ACGCATTGGG TCTGTTTCAT GACTGCGGCA TTCCGCTGAT GCTCAAGCGT
TTCCCCAATT ACATGCCGGT GCTTGAAGAC GCTTACGCCA ATGCCGGGCC TGAACGCCGC
ATCGTGGATA CCGAAAACAG TGCGTTTGAC ACCAACCATT CGGTTGTGGG CTATTACACG
GCCAAGTCCT GGCGCTTGCC GGCGCACATT ACCGACGCGA TCGCCAATCA TCACAACGCA
TTGGCGATTT TTGAAGACGA TACCAGCCGT AATGCCACAT TGAAGAATCT GTTGGCGCCC
CTGAAAATGG CCGAGCATAT CTGTCAGTCC TACCGGGTAC TGGGCAATCA GGACGAGGAT
CACGAGTGGG AAAGCATCGG CGCGCTGGTG TTGGACTACG TCGGGTTGTC CGAATACGAT
TTTGAATACC TGAGGGAAAG TATTCGCGAG CTCGGTGCGC GCTGA
|
|---|
| Protein sequence | MPDPDLGAIA RLIAQDPGLS GALLKIVNSA HYGLSNKIAS IDKAVNLLGS RTVINLINAQ
SIRGEMSDET IVALNRFWDT AQDVAMTSLT LAKRIGSQTV DESYALGLFH DCGIPLMLKR
FPNYMPVLED AYANAGPERR IVDTENSAFD TNHSVVGYYT AKSWRLPAHI TDAIANHHNA
LAIFEDDTSR NATLKNLLAP LKMAEHICQS YRVLGNQDED HEWESIGALV LDYVGLSEYD
FEYLRESIRE LGAR
|
|---|
| |