| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0225 |
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| Symbol | lsyA-2 |
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| ID | 1181833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 246405 |
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| End bp | 247652 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391594 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | NP_790076 |
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| Protein GI | 28867457 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.895635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGCCT TCAACTACCG CGACGGTGAG CTGTTCGCGG AAGGGGTAGC ATTGTCTGCC
ATTGCCGAGC GTTTCGGCAC GCCGACCTAT GTCTATTCGC GCGCTCATAT CGAAGCGCAG
TACCGTGCCT TCGCCGATGC GCTGAGCGGC ATGCCGCACA TGGTCTGCTT CGCCGTGAAA
GCCAACTCCA ACCTGGGTGT GCTCAATGTC CTGGCGCGTC TTGGCGCCGG TTTTGACATT
GTGTCGCGTG GCGAACTGGA ACGCGTGCTG GCCGCTGGCG GCAAAGCCGA AAGAATCGTG
TTCTCCGGCG TCGGCAAAAC CCGTGAAGAC ATGCGTCGCG CCCTTGAAGT CGGCGTGCAC
TGCTTCAACG TCGAATCCAC CGACGAGCTT GAGCGCCTGC AGGAAGTCGC CGCCGAACTC
AACGTTCGCG CGCCGATCTC GCTGCGCGTC AACCCGGACG TGGACGCAGG CACTCACCCC
TACATCTCCA CCGGCCTGAA AGAAAACAAG TTCGGCATCG CCATCGCGGC TGCCGAAGAC
GTTTACATTC GCGCCTCGCA GTTGCCAAAC CTGGAAGTGA TCGGCGTCGA TTGCCACATC
GGCTCGCAGC TAACCACGCT CGAGCCGTTC ATCGATGCGC TGGATCGCCT GCTGGATCTG
GTCGATCGCC TGGGCGATTG CGGCATTCAC CTGCACCACA TCGATCTGGG TGGCGGCCTG
GGTGTGCGTT ATCGCCATGA AGAGCCCCCG TTGGCGGGCG ATTACATCAA AGCGGTACGC
GAACGCCTTG CCGGGCGTGA TCTGGGCCTG CTGTTCGAGC CGGGGCGCTT TATCGTGGCC
AACGCGGGCG TGCTGCTGAC CCAGGTCGAG TACCTCAAGC ATACCGAGCA CAAGGATTTC
GCCATCGTCG ATGCGGCGAT GAACGACCTG ATCCGCCCTG CCCTGTATCA GGCCTGGATG
GACGTCACGG CGGTGCGCCC GCGTGACAGC GAACCGCGTG CGTACGACAT CGTCGGGCCG
ATCTGCGAAA CCGGCGATTT CCTTGCCAAG GGCCGCGAGC TTGCACTGGC TGAAGGCGAT
CTGCTGGCGG TGCATTCGGC CGGCGCTTAC GGTTTTGTCA TGAGCTCTAA CTACAACACC
CGTGGCCGTG CCGCTGAGGT ACTGGTCGAC GGTACCCAGG CGTTTGAAGT GCGTCGTCGC
GAAACCGTGG CCGAGCTGTT CGCTGGCGAA AGCCTGCTGC CGGAGTAA
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| Protein sequence | MDAFNYRDGE LFAEGVALSA IAERFGTPTY VYSRAHIEAQ YRAFADALSG MPHMVCFAVK
ANSNLGVLNV LARLGAGFDI VSRGELERVL AAGGKAERIV FSGVGKTRED MRRALEVGVH
CFNVESTDEL ERLQEVAAEL NVRAPISLRV NPDVDAGTHP YISTGLKENK FGIAIAAAED
VYIRASQLPN LEVIGVDCHI GSQLTTLEPF IDALDRLLDL VDRLGDCGIH LHHIDLGGGL
GVRYRHEEPP LAGDYIKAVR ERLAGRDLGL LFEPGRFIVA NAGVLLTQVE YLKHTEHKDF
AIVDAAMNDL IRPALYQAWM DVTAVRPRDS EPRAYDIVGP ICETGDFLAK GRELALAEGD
LLAVHSAGAY GFVMSSNYNT RGRAAEVLVD GTQAFEVRRR ETVAELFAGE SLLPE
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