| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0114 |
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| Symbol | |
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| ID | 1181722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 134647 |
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| End bp | 136311 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637391491 |
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| Product | GGDEF domain/EAL domain protein |
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| Protein accession | NP_789973 |
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| Protein GI | 28867354 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCCTACAC CTGTCGAACC CCTGCGATTG CTTTTATTGG CACACGAGCC TTTCTGGCAG
GCGCTTCTGA ACGGTTGCGC CGCCGCACCG GGCGGCAATG TGATCCTGCT GCATGGCGCG
AACTGGGATG TTTTCAGTGC TCGGTACGGC AGCGAGCGCA ATACCGTGCT GCTTACCACG
CCCGACCTGC TGCCCAAAAC CGGAACCTGC CTGCTGCCAA CCGTGGTGCT GCTGGAAGAG
GAACCGCTGG TCGGACCGAG CGGTGTCAGT GACTGGCTGG TGCGCGACAC GTTGACCGGC
GATGTCCTGC GCCGCTGCCT GCGCTACGTT CATGAGCGCA GCCGCCTGGA AGACACCTTG
CGACGTCTGG CTGGCCAGGA TCCGTTGACC GGCATCGCCA ACCGTCAGGG TTTTCAGGCG
CTGCTGGCCA ACCGTCTGGC AGAGGGCGGC AGCCTGGCGC TGGGGCATCT GGACCTGGAC
AACTTCCGCC ACGCCAACGA TTCGCTGGGG CATCAAGCCG GCGACCGGCT GATTCTGCAA
GTGGTGGCGC GCCTGAAAAA CCAGCTCGAT GCCGGCGACC AGATCGCCCG TCTTGGCGGT
GATGAATTTG CCCTGTTGAT CGATACCCGA ACCACCCCCA CGCGCGCCCT GCAACTGGCC
GAACGTATTA CCGACGTGCT GGCCGAGCCT TACTGGGTCG ATGGCGAAAG CCTGCTGCTC
GGCTGCAGCC TGGGCATTGC GCACTCACCC ACCCGCCCCG AAGCCGACCC GCTGATGTGG
CACGCGCATA TCGCCATGCG TCAGGCCAAA AGCATGCAGG GCTGCACCTT CCACCTGTTC
GACGAGCGCA TCAATCGCAA CGCGCGCAGC CTCGCCGACC TGGAGGGCGA ACTGCGACGG
GCCTTGCGCC GCGACGAGAT GGAGCTGCAT TACCAGCCGC GGCTGTGCCT GAACACGGGC
CGTATTGTCG GCCTCGAAGC GCTGGTGCGC TGGCGTCATC AAGAGCGTGG GCTGTTGCCG
CCCAGTGAGT TCATACCGCT GGCCGAGCAA AGCGGCCTGA TCGTGCCACT CGGCTACTGG
GTCATCTTCC GGGCCTTGAA AGACATGCAG GCCCTGCGCG AGCAAGGCCT GGCGCCGCTG
CACATGGCGA TCAACCTGTC GTTCCGGCAG TTTCAGGACA GTCAGCTGTT GCCGACGCTC
AATCGCCTGA TCGAAGAGCA CAACGTCGAC GCGCACTGGC TGGAGTTCGA ACTGACCGAA
ACAGCGGTGA TGCGCCGCAG CGATCAGGTC AGACAGACCA TGGAAGCGTT GGGCCGGCTG
GGCGTGCGGT TTTCACTGGA TGACTTCGGC ACGGGCTATT CGTCGTTCAT GCACCTCAAT
AGCCTGCCCA TTGCGCTGCT CAAGGTCGAC ATGGGCTTTG TCGAGCAGAT GGAAGCACGC
GAAGAGAACC GCAAGCTGGT CAACGCCATG ATCACGCTGG CGCACAACCT CAATCTGGAA
GTGGTCGCCG AAGGCGTCGA GACCACCGGG CAGCTGGAGC TGTTACGCAG TTTCGGCTGC
AATCAGGTGC AGGGCTACCT GATCAGCAGG CCGCTGCCGA TGGAGCAACT GCTGACGTAC
CTGCGCCTGG AAGCCAGTCA GGCCGATGCT TCTCAGTCTG GCTGA
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| Protein sequence | MPTPVEPLRL LLLAHEPFWQ ALLNGCAAAP GGNVILLHGA NWDVFSARYG SERNTVLLTT
PDLLPKTGTC LLPTVVLLEE EPLVGPSGVS DWLVRDTLTG DVLRRCLRYV HERSRLEDTL
RRLAGQDPLT GIANRQGFQA LLANRLAEGG SLALGHLDLD NFRHANDSLG HQAGDRLILQ
VVARLKNQLD AGDQIARLGG DEFALLIDTR TTPTRALQLA ERITDVLAEP YWVDGESLLL
GCSLGIAHSP TRPEADPLMW HAHIAMRQAK SMQGCTFHLF DERINRNARS LADLEGELRR
ALRRDEMELH YQPRLCLNTG RIVGLEALVR WRHQERGLLP PSEFIPLAEQ SGLIVPLGYW
VIFRALKDMQ ALREQGLAPL HMAINLSFRQ FQDSQLLPTL NRLIEEHNVD AHWLEFELTE
TAVMRRSDQV RQTMEALGRL GVRFSLDDFG TGYSSFMHLN SLPIALLKVD MGFVEQMEAR
EENRKLVNAM ITLAHNLNLE VVAEGVETTG QLELLRSFGC NQVQGYLISR PLPMEQLLTY
LRLEASQADA SQSG
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