| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0070 |
|---|
| Symbol | |
|---|
| ID | 1181678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 92710 |
|---|
| End bp | 93558 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637391447 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_789929 |
|---|
| Protein GI | 28867310 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTC CTTCGCTTCT GATCGCCGGT TGTGGCGACA TCGGTTCTCG ACTCGCTACC
CGGCTTCAGC CCCATGGCTG GGTTGTCCAC GGGCTGCGCC GCACTGTTTC CGAGCTTCCG
GCCGGGGTGA TTGGCGTGGA GGGTGATCTG TTCGAGGCTC AGCGGCCCGC GCAGTGGCCC
ACTGCTGCGC TGGACTACGT GGTGTATTGC GCCACGCCTT CACAACGCGA CGAAACGGGT
TACCGGATGG CCTATGTGGA AGGCCTGCGT AACGTATTGA GCTGGCTTGA GCAGACGGGG
CAGCAACCCA AACGGCTGAT CTTTGTCTCA AGCAGCGGTG TCTACGGCCA GCAGAACGGC
GAGTGGGTCG ATGAGAATTC GGCCACCGAA CCGGGCGGCT ATACCGGCAC GGTGATGCTT
GAGGCCGAGC AGCTTGCGCT GAACAGCGGG TTGCCCGCCA CGGCCGTCAG GCTGACCGGC
ATTTATGGCC CGGGGCGCAG CGATCTGTCG AATCGTGTGC GCCAGGGGCA CAGCGTGCGG
GTGGACCCGC CTGTCTACGC CAACCGCATT CATGCCGATG ACGCCGCCAG CCTGCTGGAA
CACCTGCTGC AAGCGGACTT GCGCGGTGTG GCACTGGAAA GCTGCTATCT GGGGGTCGAT
GATGACCCTG CCGCGCTGGC CGACGTGGTG GCGTGGCTGC GTGAGTATCT AGGCGTGACC
GAATGGTCGG AGGATGTCAG CGTGCAGCGC GTCGGCAGCA AGCGTTGCAG CAATGCCAGG
GCACGAGCCT TGGGATGGGC GCCGATGTAC CCGGATTACC GGGCTGGCTA TGCGGCTTTA
CTGGGGTAG
|
|---|
| Protein sequence | MTAPSLLIAG CGDIGSRLAT RLQPHGWVVH GLRRTVSELP AGVIGVEGDL FEAQRPAQWP
TAALDYVVYC ATPSQRDETG YRMAYVEGLR NVLSWLEQTG QQPKRLIFVS SSGVYGQQNG
EWVDENSATE PGGYTGTVML EAEQLALNSG LPATAVRLTG IYGPGRSDLS NRVRQGHSVR
VDPPVYANRI HADDAASLLE HLLQADLRGV ALESCYLGVD DDPAALADVV AWLREYLGVT
EWSEDVSVQR VGSKRCSNAR ARALGWAPMY PDYRAGYAAL LG
|
|---|
| |