| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5164 |
|---|
| Symbol | pilD |
|---|
| ID | 5358087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 5312435 |
|---|
| End bp | 5313307 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640814210 |
|---|
| Product | type 4 prepilin peptidase PilD |
|---|
| Protein accession | YP_001350499 |
|---|
| Protein GI | 152984319 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.413095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTC TCGACTACCT GGCCAGCCAT CCGCTGGCCT TTGTCTTGTG CGCCATCGTC
CTCGGCCTGC TGGTCGGCAG CTTCCTCAAC GTCGTCGTGC ACCGCCTGCC GAAGATGATG
GAGCGCAACT GGAAGGCCGA GGCCCGCGAG GCGCTCGGGC TGCAGCCGGA GCCTGATCCG
GCGATCTACA ACCTGGTCCT GCCGAACTCC TCGTGCCCGC ATTGCGGCCA CGAGATCCGT
CCCTGGGAAA ACATCCCGGT GCTCAGCTAC CTGGCGCTGG GCGGCAAGTG CTCGTCCTGC
AAGGCCGCCA TCGGCAAACG CTACCCCCTG GTGGAACTGG CCACCGCGCT GCTTTCCGGC
TACGTCGCCT GGCATTTCGG CTTCACCTGG CAGGCGGGCG CGATGCTCCT GCTGACCTGG
GGCCTGCTGG CGATGAGCCT GATCGATGCC GATCACCAGC TGCTGCCGGA CGTGCTGGTG
CTGCCGCTGC TCTGGCTGGG CCTGATCGCC AACCATTTCG GCCTCTTCGC CAGCCTCGAC
GACGCGCTGT TCGGCGCGGT GTTCGGCTAC CTCAGCCTGT GGTCGGTGTT CTGGCTGTTC
AAGCTGGTGA CCGGCAAGGA AGGCATGGGC TACGGCGACT TCAAGCTGCT GGCCATGCTC
GGCGCCTGGG GCGGCTGGCA GGTCCTGCCG CTGACCATCC TGCTGTCGTC GCTGGTCGGG
GCCATCCTCG GGGTGATCAT GCTGCGCCTG CGCAACGCCG CAAGCGGCAC GCCGATCCCC
TTCGGTCCCT ATCTGGCGAT TGCCGGGTGG ATTGCATTGC TCTGGGGTGA TCAAATAACC
CGGACCTATT TGCAATTCGC CGGATTCAAA TGA
|
|---|
| Protein sequence | MPLLDYLASH PLAFVLCAIV LGLLVGSFLN VVVHRLPKMM ERNWKAEARE ALGLQPEPDP
AIYNLVLPNS SCPHCGHEIR PWENIPVLSY LALGGKCSSC KAAIGKRYPL VELATALLSG
YVAWHFGFTW QAGAMLLLTW GLLAMSLIDA DHQLLPDVLV LPLLWLGLIA NHFGLFASLD
DALFGAVFGY LSLWSVFWLF KLVTGKEGMG YGDFKLLAML GAWGGWQVLP LTILLSSLVG
AILGVIMLRL RNAASGTPIP FGPYLAIAGW IALLWGDQIT RTYLQFAGFK
|
|---|
| |