| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4969 |
|---|
| Symbol | |
|---|
| ID | 5358968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 5122985 |
|---|
| End bp | 5125081 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640814015 |
|---|
| Product | putative two-component sensor |
|---|
| Protein accession | YP_001350305 |
|---|
| Protein GI | 152987472 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGC GCCAGCGCCT CGACAACCTG CCCGTCGGAC AGAAACTGCT CGCCGCCCTG
CTGATCCTGC TGGCCACCGT GCTGCTGGTG GCCAACCTGG CGTTCATCAG CGCCGCCTAC
TGGATCTCCC AGGAAAGCGT CGCGCCCCAG GCCATGCAGA CCATCGGCCG GCTGATCGCC
AACCCGGCGC TGAGCCAGCC GGCGCTCAGT TCGCCGCAGA CCGCCGAGGT CCTGCTGCGC
CAGCTCAACG ACTACCAGCC GCTGCGCGCC GCCGCCCTGT ACGACAGCAA CGGCCTGATG
CTGGCCGACC TGCAGCGCGG CGATACCCTC AAGCTGCCGG CCCGGCTCGA TCGCCTGGAA
CACTGGCGAC GCGGCGAATA TCGCCTCAAT GCGCTGATCG AGCTACCACA GGAAAACGCC
CGCCCCGGCT ACCTGCTGCT GGTGGCCAGC GGTGAGCTGC CCAGCGCCTT CTACACCGGG
ACCCTCACCG CCAGCCTGGC GATCCTCGGT ATCAGCGTGC TGCTCTGGCT GCTGGTGGCG
CAGCAGATCC GCCGCCTGAT CACCCGGCCG ATCCGCGACC TGGAGGAACT CTCGCGCCAG
GTCACCCGCG AGGAAAACTA CGCGCTGCGG GCCCAGCGCG GCAACGGCGA CGAGATCGGC
CGCCTGGCCG ACGCCTTCAA CACCATGCTG ACCCGCATCG AAGCCCGCGA GCAGCAGCTC
AAGCGCGCCC GCGACGACGC CCAGGAGGCG GTCGAGCAGG CCCAGAGCCT GGCCGAGGAA
ACCCGCCGCT CGAACCGCAA GCTGGAACTG GAAGTGCAGG TGCGCAGCAA GATCGAGAAG
AAGCTCACCG GTTTCCAGCA CTACCTCAAC AGCATCATCG ACTCCATGCC CTCGGCGCTG
ATCGCGGTGG ACGAGCAGCT CTATGTCACC CAGTGGAACC AGGAAGCCAG CCAGCTTTCC
GGCACCAGCC TGGACGACGC GGTGAACCAG CCGGTGTTCC TTGCCTTCCC CTCGCTCAAG
CCGTTCCTCC CGCAGCTCAC CCGCGCCGCC GAGAAACACA GCGTGGAGCG CGTAGAAAGG
GTCACCTGGG CACTGATCGA CACCCCGCGC CACTATGCCC TGACCTTCTA TCCGCTGATG
GGCGGCACCG GCCGTGGCGC GGTGATCCGC ATCGACGACA TCACCCAGCG CCTGAGCCTG
GAAGAAGTGA TGGTGCAATC GGAGAAGATG CTTTCGGTCG GCAGCCTCGC CGCCGGCATG
GCCCACGAGA TCAACAACCC GCTCGGTGCG ATCCTGCACA ACGTACAGAA CATCAAGCGA
CGCCTGTCCC CGGAGCTGGC GAAGAACGTC GAGCTGGCCG CCGAGGTCGG CGTGCCGCTG
GAAGACATCA ATCACTACCT CGATGGTCGC GACATCCCGC GCCTGCTTGA AGGCATCCAG
CACGCCGGCT CGCGGGCGGC GAAGATCGTC ACCCACATGC TCGCCTTCAG CCGCCGCAGC
CACCGGCAGA TGACCGCCTG CGAGCTGCCC GCGCTGATCG AACAGGCGGT GGAGATCGCC
GGCAACGATT TCGACCTGGC CGAGGGTTTC GACTTCAAGT CGCTGCAGAT CGTCCATGAG
TTCGACCCCA ACCTGGGGCC GGTGCCGGTG ATCGCCAACG AGGTCGAGCA GGTCCTGCTC
AACCTGCTGA AGAACGCCGC CCAGGCCATC CACCAGCGCG ACGACGAAGA GGAAGGCGAG
CAAGGCCGGA TCGTCCTGCG TACGCGTCTG GTGCCGCCCT GGGCGGAAGT CCAGGTGGAA
GACAACGGCA GCGGCATGCC GGAGCTGGTG CGCAAGCGGA TCTTCGAGCC GTTCTTCACC
ACCAAGGAAG TCGGCCAGGG TACCGGCCTC GGCCTGTCGG TCTCGTATTT CATCATCACC
AACAATCACA AGGGCCAGAT GGAGGTGCGC TCGGAACTCG GCCGTGGCAC CTGCTTCAGC
ATCCGCCTGC CGCTGGAGAG CACCGGACTG GTCGCCCCGG CACAGGCCAA GGCCCTGCCA
CCCGCCCTGC CGCAGCCGGG CAGCAGCCTG CGGCGTGGCG ACGAAGAGGA AGGTTGA
|
|---|
| Protein sequence | MNLRQRLDNL PVGQKLLAAL LILLATVLLV ANLAFISAAY WISQESVAPQ AMQTIGRLIA
NPALSQPALS SPQTAEVLLR QLNDYQPLRA AALYDSNGLM LADLQRGDTL KLPARLDRLE
HWRRGEYRLN ALIELPQENA RPGYLLLVAS GELPSAFYTG TLTASLAILG ISVLLWLLVA
QQIRRLITRP IRDLEELSRQ VTREENYALR AQRGNGDEIG RLADAFNTML TRIEAREQQL
KRARDDAQEA VEQAQSLAEE TRRSNRKLEL EVQVRSKIEK KLTGFQHYLN SIIDSMPSAL
IAVDEQLYVT QWNQEASQLS GTSLDDAVNQ PVFLAFPSLK PFLPQLTRAA EKHSVERVER
VTWALIDTPR HYALTFYPLM GGTGRGAVIR IDDITQRLSL EEVMVQSEKM LSVGSLAAGM
AHEINNPLGA ILHNVQNIKR RLSPELAKNV ELAAEVGVPL EDINHYLDGR DIPRLLEGIQ
HAGSRAAKIV THMLAFSRRS HRQMTACELP ALIEQAVEIA GNDFDLAEGF DFKSLQIVHE
FDPNLGPVPV IANEVEQVLL NLLKNAAQAI HQRDDEEEGE QGRIVLRTRL VPPWAEVQVE
DNGSGMPELV RKRIFEPFFT TKEVGQGTGL GLSVSYFIIT NNHKGQMEVR SELGRGTCFS
IRLPLESTGL VAPAQAKALP PALPQPGSSL RRGDEEEG
|
|---|
| |