| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4146 |
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| Symbol | aprD |
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| ID | 5358110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 4284152 |
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| End bp | 4285933 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640813196 |
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| Product | alkaline protease secretion protein AprD |
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| Protein accession | YP_001349500 |
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| Protein GI | 152987685 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.591571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGGC TCGGTTCCAG CGTTACCAAC GAAATCAAAC AGGCCCTCGC CGCCAGCCGC
GGCGCGGTGC GCAGCGTGGC GGCATTCTCC GGGGTGATCA ACCTGCTGAT GCTGGTGCCG
TCTCTGTATA TGTTGCAGGT GTACGACCGC GTGCTGTCGT CGGCCAACGA AGTCACCCTG
TTGATGCTGA CCCTGATGGC GCTCGGCGTG TTCGTCTTCA TGGGCGTGCT GGAGGCGCTG
CGTAGCTTCG TCCTGGTGCG GGTCAGCGAG CGTTTCGACG GCCAGTTGCA CGGTCGGGTC
TACGCCGCCG CCTTCGAACG CAACCTGCGC GGTGGCGGCC AGGAGGCCAG CCAGGCGCTG
CACGACCTGA CCACCCTGCG CCAGTTCATC ACCGGGCAGG CGCTGTTCGC CTTCTTCGAC
GCGCCCTGGT TCCCGGTCTA CCTGCTGGTG ATCTTCCTCT TCGACCCATG GCTCGGCCTG
CTCTCGCTGG TCGGCGCGCT GGCGCTGATG GCCCTGGCCT GGTTCAACGA GCGCGCCACC
CGCGCGCCGC TGGCCAGGGC CGGCGAGCTG TCGATCAAGT CCGGGCAGGT GGCCAGCAAT
ACCCTGCGCA ACGCCGAGGT GATCGAGGCG ATGGGCATGC TCGGCAGCCT GCGCGGGCGC
TGGGAGCAAT TGCACCAGGC GTTCCTCGAC CAGCAGAGCC TGGCCAGCGA GCGCGCGGCG
CGGATCAACG CGCTGAGCAA GTACCTGCGC ATCGCCCTGC AATCGCTGGT GCTCGGCCTC
GGCGCCTGGC TGGCGGTGGA GGGGCGGATC ACCCCGGGGA TGATGATCGC CGGCTCGATC
CTGATGGGCC GTGCGCTGGG GCCGATCGAC CAGTTGATCG GCGTGTGGAA GCAATGGGGT
TCGGCGCGCG ACGCCTACCG TCGGCTGGAC GGCCTGCTCG GCGAGTTTCC CGCCCGCGAG
GCACGCATGG AGCTGCCCGA ACCGCGCGGC CAGTTGCTGC TGGAGTCGGT GGACGCGGCG
CCGCCCGGCA GCGAAGCGCG CACCCTGCGC GGGCTGACCC TGGCGATTCC GGCCGGCGCG
GTGGTCGGCG TGATCGGCCC GTCCGGCTCC GGCAAGTCGA GCCTGGCGCG GGTCCTGCTG
GGCATCTGGC CGACCCTGCA GGGCAGCGTG CGCCTGGACG GCGCCGAGAT CCGCCAGTAC
CGGCGCGAGA CCCTCGGTCC GCGCATCGGC TACCTGCCGC AGGATATCGA GCTGTTCGCC
GGCACGGTGG CGGAGAACAT AGCCCGCTTC GGCGCGGCGG ACCCGGAGAA GGTGGTCGAG
GCGGCGCGCC TGGCTGGCGT CCACGAGCTG GTACTGCGCC TGCCGCAAGG CTACGACACC
GCGCTCGGCG TCGGCGGTGC CGGGCTGTCC GGTGGCCAGC GCCAGCGCAT CGCCCTGGCC
CGCGCGCTGT ACGGCGCGCC GAACCTGGTG GTGCTCGACG AACCCAACTC GAACCTCGAC
GACAGCGGCG AACAGGCTCT GCTGGCGGCG ATCCAGGCGC TCAAGGCGCG CGGCTGCACG
GTGCTGCTGA TCACCCACCG GGCCGGCGTG CTGAGCTGCG CCGACCGCCT GCTGGCGCTG
AACGCCGGGC AGTTGCACCT GTACGGCGAG CGCGACCAGG TGCTCGGTGC CTTGAACAGC
CAGCGCGCCG CGCCGGCGCC GCAGCAGCGC GCGGACTACC GGGTGGGCGG CTATGGCACG
CCGCAGGTGG TGGCCGCGCC GCGCCAGGGA GGAGTGGAAT GA
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| Protein sequence | MARLGSSVTN EIKQALAASR GAVRSVAAFS GVINLLMLVP SLYMLQVYDR VLSSANEVTL
LMLTLMALGV FVFMGVLEAL RSFVLVRVSE RFDGQLHGRV YAAAFERNLR GGGQEASQAL
HDLTTLRQFI TGQALFAFFD APWFPVYLLV IFLFDPWLGL LSLVGALALM ALAWFNERAT
RAPLARAGEL SIKSGQVASN TLRNAEVIEA MGMLGSLRGR WEQLHQAFLD QQSLASERAA
RINALSKYLR IALQSLVLGL GAWLAVEGRI TPGMMIAGSI LMGRALGPID QLIGVWKQWG
SARDAYRRLD GLLGEFPARE ARMELPEPRG QLLLESVDAA PPGSEARTLR GLTLAIPAGA
VVGVIGPSGS GKSSLARVLL GIWPTLQGSV RLDGAEIRQY RRETLGPRIG YLPQDIELFA
GTVAENIARF GAADPEKVVE AARLAGVHEL VLRLPQGYDT ALGVGGAGLS GGQRQRIALA
RALYGAPNLV VLDEPNSNLD DSGEQALLAA IQALKARGCT VLLITHRAGV LSCADRLLAL
NAGQLHLYGE RDQVLGALNS QRAAPAPQQR ADYRVGGYGT PQVVAAPRQG GVE
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