| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3804 |
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| Symbol | ligA |
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| ID | 5357234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 3935463 |
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| End bp | 3937847 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640812854 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001349158 |
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| Protein GI | 152984776 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACA CCCAGGCCGC CGCCGAACGT ATCGCGCAAC TGCGAACCGA GCTGGACACC
CACAACTACC GTTACTACGT GCTCGACGAG CCGAGCATTC CGGACGCCGA GTACGACCGC
CTGTTCCGCG AACTGCAGGC GCTGGAGGCG GAGCACCCGC AACTGCTGAC GCCCGATTCG
CCGACCCAGC GGGTCAGCGG CACCCCGGCC TCGGCTTTTG GCGAAGTGCG CCATGAAATC
CCCATGCTCA GCCTCGGCAA TGCCTTCGAG GAGCAGGACC TGCTGGACTT CGACCGTCGG
GTGCGCGAGG GCCTGGCCGA TCTGCTGCCG GGCGGCGACC TGCTCGGTGG CGGGGCGGAG
GTGGAATACA GCTGCGAGCC GAAGCTGGAC GGCCTGGCCG TCAGCCTGCT CTACGAGAAC
GGTCAACTGG TGCGCGGCGC CACCCGCGGC GATGGCAGCA CCGGCGAGGA CATCACCAGC
AACGTGCGCA CCATTCGCAA CGTACCGCTG AAGCTGCACG GCGAAGGCTG GCCGGACATC
CTCGAAGTGC GCGGCGAGGT GTTCATGTCC AGGGCCGGTT TCGAGGCGCT CAACGCCAAG
GCCGTGGAAA CCGGCGGCAA GACCTTCGCC AACCCGCGCA ACGCGGCAGC CGGCAGCCTG
CGCCAGCTGG ACTCGAAGAT CACCGCCAGC CGCCCGCTGG AGTTCTGTGC CTACGGTTTC
GGCCGGGTCA GCGGAACGCT GCCGGATACC CAGGTGGGCA TCCTGGAGGC GTTCCGCGGC
TGGGGCATTC CGATCAGCCG CGAGCTGCGC CTGGTGAAGG GCGCCCAGGC CTGCCGCGAT
TACTACGACG ATATCGGCCG CCGGCGCGAT GCGCTGGCCT ACGAGATCGA CGGGGTGGTG
TTCAAGGTCA ATCGCATCGC CTTCCAGCGT GAGCTGGGTT TCCGCGCCCG CGAGCCACGC
TGGGCGATCG CCCACAAGTT TCCCGCCCGC GAGGAACTGA CCGAGCTGCT CGGCGTGGAG
TTCCAGGTCG GCCGTACCGG CGCGGTGACT CCGGTGGCGC GTCTCAAGCC GGTGCAGGTG
GCCGGCGTCA CGGTGTCCAA CGCGACCCTG CACAATATGG ACGAGGTTGC CCGCCTGGGT
CTGCGCATCG GCGACACGGT GGTGATCCGC CGCGCCGGCG ACGTGATTCC GCAGGTCATG
CAGGTGGTGC TCGAGCGCCG CCCGGCGGAT GCGCAGCCGA TCGAGGTGCC CGAGCACTGC
CCGGTCTGCG GCTCGGCCGT GGAGCGGACC CAACTGGTCA GGCGCAGCAA GGGCAGGGAG
TCGCTCAGCG AGGGCGCGAT CTACCGTTGT GTCGGCCGGC TGTCCTGCCA GGCGCAACTG
AAGCAGGCGA TCATCCATTT CGTCTCGCGC CGGGCAATGG ACATCGACGG CCTTGGCGAC
AAGATCGTCG AGCAATTGGT GGATCGCGGG CTGGTCGCCT CGCCGGCGGA TCTCTATACC
CTGACCTATG ACCAGGTGTT CGAGCTGGAA GGGTTCGCCG AGCTGTCCAC CAACAACCTG
CTGGCGGCCA TCGCCGACAG CCGCACGCCT TCGCTGGCGC GCTTCATCTT CGCCCTCGGG
ATTCCCGACG TCGGCGAGGA GACCGCCAAG CTGCTGGCGC GCTCGCTGGG TTCGCTGGAG
CGGATCGGCA AGGCGCTGCC GGAAGTGCTG ACCTACCTGC CGGACGTCGG CGCCGAGGTG
GCATACGAGA TCCACAACTT CTTCGCCGAC GAGCACAACC GCCAGGTGAT CGCCCAGTTG
CGCGATGCCG AACATGGCGT GCAGTTGCAG GAAGAGGGCG AGGTCGCCGC GGAGTTCGCC
GCCTGTGCCT CGCTGGCCGG TTTCATCGAC AAGCTGAACA TTCCCTTCAT CGCCGCCACC
GGCGCGGAAA AGCTGGCCAG CCGCTTCGGT TCGCTCGACG GCATCATCCG CGCCGACTGG
CTCGATCTAC GCCAGGTGGA GCGTCTGCCC GAGCGAGCGG CGAAAAGCCT GCGCGATTTC
CTCGACGAGC CGGCCAACGT GCAGCGTGCC CTGGCCATCG AGGCGCAGTT GCGTGAGTTC
GGCATGCATT GGCAGAGCGA GCGCAAAGCG GTCGAAGGCC TGCCTCTGGC CGGGCAGACC
TGGGTACTGA CCGGCACCCT GGAGGCGATG AGTCGCGACG TGGCCAAGGA GAAGCTGGAA
GGGCTCGGCG CCAAGGTCGC CGGCTCGGTC TCGGCCAGGA CCCACTGCGT GGTCGCCGGG
CCCGGCGCCG GCTCGAAGCT GGCCAAGGCC AACGAACTGG GGCTGAAGGT CCTCGACGAG
GACGGCCTGC TGAAACTCTT GGACGAATAC GGCGTCGCCC ACTGA
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| Protein sequence | MTDTQAAAER IAQLRTELDT HNYRYYVLDE PSIPDAEYDR LFRELQALEA EHPQLLTPDS
PTQRVSGTPA SAFGEVRHEI PMLSLGNAFE EQDLLDFDRR VREGLADLLP GGDLLGGGAE
VEYSCEPKLD GLAVSLLYEN GQLVRGATRG DGSTGEDITS NVRTIRNVPL KLHGEGWPDI
LEVRGEVFMS RAGFEALNAK AVETGGKTFA NPRNAAAGSL RQLDSKITAS RPLEFCAYGF
GRVSGTLPDT QVGILEAFRG WGIPISRELR LVKGAQACRD YYDDIGRRRD ALAYEIDGVV
FKVNRIAFQR ELGFRAREPR WAIAHKFPAR EELTELLGVE FQVGRTGAVT PVARLKPVQV
AGVTVSNATL HNMDEVARLG LRIGDTVVIR RAGDVIPQVM QVVLERRPAD AQPIEVPEHC
PVCGSAVERT QLVRRSKGRE SLSEGAIYRC VGRLSCQAQL KQAIIHFVSR RAMDIDGLGD
KIVEQLVDRG LVASPADLYT LTYDQVFELE GFAELSTNNL LAAIADSRTP SLARFIFALG
IPDVGEETAK LLARSLGSLE RIGKALPEVL TYLPDVGAEV AYEIHNFFAD EHNRQVIAQL
RDAEHGVQLQ EEGEVAAEFA ACASLAGFID KLNIPFIAAT GAEKLASRFG SLDGIIRADW
LDLRQVERLP ERAAKSLRDF LDEPANVQRA LAIEAQLREF GMHWQSERKA VEGLPLAGQT
WVLTGTLEAM SRDVAKEKLE GLGAKVAGSV SARTHCVVAG PGAGSKLAKA NELGLKVLDE
DGLLKLLDEY GVAH
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