| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_3106 |
|---|
| Symbol | |
|---|
| ID | 5353792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 3222372 |
|---|
| End bp | 3223979 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640812156 |
|---|
| Product | trehalose synthase |
|---|
| Protein accession | YP_001348465 |
|---|
| Protein GI | 152989008 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | [TIGR02456] trehalose synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0151531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTG AATGGTATCG CCACTGCCTG ATCTACCAGA TCGATCCATC GCTGTTCCGC
GACAGCGACG CCGACGGTTG CGGCGACCTG GCCGGTATCG TCGAGCGCCT CGACTATCTG
CGCGAACTGG GCGTCGGTGC GTTGTGGCTG ATGCCGCTGT ACCGCTCGCC GTTCCGCGAC
GCCGGCTACG ATGTCAGCGA CCACCTGGCG CTGGAGCCGC GCTTCGGCAG CGAGGAGGAT
CTCCGGCGGC TGGTGAGCGA GGCCGCCGCG CGCGGCATGC GGGTGATTCT CGAACTGGTG
GTGCAGCACA CCTCGGATCA GCACCCCTGG TTCGTCGCCG CCCGGCATGA CCGCGAGGCG
CCCTGTCGCG ACTACTACCT GTGGTCGGAC CGGCCGCTGG ACGACGGCAA CCGGCCGATC
TTTCCCTCCG TGGAGGACGG CATCTGGAAC TGGGACGCCC AGGCCGGGCA GTACTACCGC
CATCTTTTCT ACAGCCACGA GCCGGACCTG AACCTGAAGA ACCTGCGGGT CATCGAGGAA
GTCGAGCGGG TCATGAGCCA CTGGCTGGAA CTGGGCGTCG CCGGTTTCCG CCTGGATGCC
GCCTCGCACC TGGTCGAACA GGCCGGCGGC GGCGACGAGC GACGTGGCGC CTGGCTGCTC
GAACGGCTCG CCCGGCATGC GCCGGAGGCG CTGCTGATGG GCGAGGTGGA CGTCGAGCCC
GACCGTTACC GCCATTACTT CGGCGACGGC AGGCGACTGG GGCTGGTACT GGACTTCTGG
ATCAACAACC ACCTGTTCCT CGCTCTCGCC CGGCAGAGCG CCGAACCGCT GCGCCGCGCG
CTGGTCCGCC AGCCGGTGCC GCCGCCGGGC TGCGGCTACG CCCTGTGGCT GCGCAATCAT
GACGAGCTGG ACCTGGAGCG CCTGAGCGAG GCCGAGCGCG AGGAGGTCAT GCGCGCCTTC
GCCCCCGAGC AGAACATGCG CCTCTATGGC CGCGGCATCC GCCGGCGCCT GGCGCCGATG
CTCGGCGGCG ACGTCCGCCG CCAGGCGATG GCCTACGCCC TGCTGCTGTC CCTGCCGGGC
ACGCCGATCC TGCGCTACGG CGAGGAAATC GGCATGGGGG ACGACCTGCG GCGCCCGGAA
CGCCTGGCGG TGCGCACGCC CATGCAATGG AGCGACCAGC CCCACGCGGG GTTTTCCGAC
GCGCCCGCCG AACGCCTGGC GGTGGCGCCG ATCGAGGACG GGCCGTTCGC CTGCACGCGG
GTCAACGTCG CCGCCCAGGA TGCGGCGCCG GACTCCCTGC TCAACCGGGT ACGGCGCCTG
GCCCGGGCGC GCGCGGAACT GCCGGAGACG GGCCTGGGCC AGGCCAGCCT GGTACCGACC
GACCAGCCGG CGCTGTTCGC CATGCGCCAT GATCGCGGCC AGGCGCCCGG CAGCCTGATG
CTGGTCAACC TGTCCGAGCG GCCGCTACGC GCGTGCATAG GCGAGCTGGA TCTCGGCGCC
TACCGGGAAA TCCTCGCCGA TGACGACTAC CCGCCTCCGC ACGGCAACCG GGTCTCGCTG
GCCGGCTACG GCTACCGCTG GTTCCGTCGC GACGGCTCAC AGCCATAG
|
|---|
| Protein sequence | MDAEWYRHCL IYQIDPSLFR DSDADGCGDL AGIVERLDYL RELGVGALWL MPLYRSPFRD
AGYDVSDHLA LEPRFGSEED LRRLVSEAAA RGMRVILELV VQHTSDQHPW FVAARHDREA
PCRDYYLWSD RPLDDGNRPI FPSVEDGIWN WDAQAGQYYR HLFYSHEPDL NLKNLRVIEE
VERVMSHWLE LGVAGFRLDA ASHLVEQAGG GDERRGAWLL ERLARHAPEA LLMGEVDVEP
DRYRHYFGDG RRLGLVLDFW INNHLFLALA RQSAEPLRRA LVRQPVPPPG CGYALWLRNH
DELDLERLSE AEREEVMRAF APEQNMRLYG RGIRRRLAPM LGGDVRRQAM AYALLLSLPG
TPILRYGEEI GMGDDLRRPE RLAVRTPMQW SDQPHAGFSD APAERLAVAP IEDGPFACTR
VNVAAQDAAP DSLLNRVRRL ARARAELPET GLGQASLVPT DQPALFAMRH DRGQAPGSLM
LVNLSERPLR ACIGELDLGA YREILADDDY PPPHGNRVSL AGYGYRWFRR DGSQP
|
|---|
| |