| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5417 |
|---|
| Symbol | atpF |
|---|
| ID | 1046071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 6179638 |
|---|
| End bp | 6180108 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637148815 |
|---|
| Product | F0F1 ATP synthase subunit B |
|---|
| Protein accession | NP_747517 |
|---|
| Protein GI | 26992092 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0711] F0F1-type ATP synthase, subunit b |
|---|
| TIGRFAM ID | [TIGR01144] ATP synthase, F0 subunit b |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.496413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000678034 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACATTA ATGCAACCCT GATTGGCCAA TCCGTTGCTT TCCTGATTTT TGTACTCTTC
TGCATGAAGT ATGTATGGCC TCCGGTCATC ACTGCTCTGC AAGAGCGCCA AAAGAAGATT
GCCGACGGCT TGGACGCTGC CAACCGCGCA GCTCGCGACC TGGAGCTGGC CCAAGAGAAA
GCGGGTCAGC AACTGCGTGA AGCTAAAGCA CAAGCAGCCG AAATCATCGA GCAAAGCAAG
AAACGCGCTG CTCAGCTTGT CGACGAAGCC CGTGAACAGG CTCGCGTCGA AGCTGACCGT
GTGAAGGCTC AGGCTCTGGC CGAGATCGAA CAGGAACTGA ACAGCGCTAA AGACGCCCTG
CGTGCCCAAG TGGGTGCTCT GGCCGTTGGT GGTGCTGAAA AGATCCTTGG CGCCACAATC
GATCAAAACG CGCATGCGGA GCTGGTTAAC AAACTGGCCG CTGAAATTTA A
|
|---|
| Protein sequence | MNINATLIGQ SVAFLIFVLF CMKYVWPPVI TALQERQKKI ADGLDAANRA ARDLELAQEK
AGQQLREAKA QAAEIIEQSK KRAAQLVDEA REQARVEADR VKAQALAEIE QELNSAKDAL
RAQVGALAVG GAEKILGATI DQNAHAELVN KLAAEI
|
|---|
| |