| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_5340 |
|---|
| Symbol | |
|---|
| ID | 1042594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 6087769 |
|---|
| End bp | 6088812 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637148739 |
|---|
| Product | histone deacetylase superfamily |
|---|
| Protein accession | NP_747441 |
|---|
| Protein GI | 26992016 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.863251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000438214 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACGA TCTATTCCGA TGACCACCGC CTGCACCACG GCCGCTGCGA GCTGATCGAT
GGCAAGCTGA TGCCCTGTTT CGAAATGCCT TCGCGCGCCG ACCATGTGCT CGACCAGGTG
AAAAAACGCA AGCTCGGCGA CATCCAGGGC CCGACCGACT TCGGCCGTGC GCCGTTGTTG
CGCGTCCACA GCGCCGATTA CCTGGATTTC TTCGAAGGCG CCTGGGCCCG CTGGGCTGCG
CTGGGCCAAG AGGGTGACCT GCTGCCCTTC ACCTGGCCGG CCCGCACACT GCGCCAGGTC
AAGCCGACCG GCCTGCATGG CGAACTGGGT TACTACAGTT TCGATGCCGG CGCCCCCATC
ACCGCGGGTA CCTGGCAGGC GGCCTACAGT GCTGCGCAAG TTGCCCTGAC CGCCCAGGCT
GCAATTCAGC AAGGCGCCCA TGCCGCGTTC GCCCTGTGCC GTCCGCCAGG GCACCACGCT
GCCGGCGAAG TGATGGGCGG CTACTGCTAT CTGAATAATG CCGCCATCGC CGCCCAGGCC
TTCCTCGACC AAGGCCGACG CAAGGTCGCC ATCCTTGACG TCGACTACCA CCACGGCAAC
GGTACGCAGG ACATCTTCTA CAGCCGCGAC GACGTGTTCT TCGCCTCGAT CCACGGCGAC
CCGCAGGACG AATTCCCGTT CTTCCTCGGC TATGCCGATG AAACCGGCGA AGGCGCAGGC
CAGGGCTACA ACATCAACTA CCCCTTGCCC GCCGGTAGCG ACTGGGCCGC CTGGAGCGCA
GCCCTGGAGG ATGCCTGCAA GCGCATCGCC AGCTATGACG CCGACGTGCT GGTCATCTCC
CTGGGTGTGG ACACCTTCAA GGACGACCCC ATCTCGCAGT TCAAGCTGGA CAGCCCGGAT
TACCTGGAAA TGGGCAAGCG CATCGGCCAA CTCGGCAAGC CGACCCTGTT CGTGATGGAA
GGCGGCTACG CTGTGGAAGA AATCGGCATC AACGCGGTCA ATGTGCTGGA AGGCTTCCAG
CGCGCCCAGT CAGGAGCCCG ATAA
|
|---|
| Protein sequence | MLTIYSDDHR LHHGRCELID GKLMPCFEMP SRADHVLDQV KKRKLGDIQG PTDFGRAPLL
RVHSADYLDF FEGAWARWAA LGQEGDLLPF TWPARTLRQV KPTGLHGELG YYSFDAGAPI
TAGTWQAAYS AAQVALTAQA AIQQGAHAAF ALCRPPGHHA AGEVMGGYCY LNNAAIAAQA
FLDQGRRKVA ILDVDYHHGN GTQDIFYSRD DVFFASIHGD PQDEFPFFLG YADETGEGAG
QGYNINYPLP AGSDWAAWSA ALEDACKRIA SYDADVLVIS LGVDTFKDDP ISQFKLDSPD
YLEMGKRIGQ LGKPTLFVME GGYAVEEIGI NAVNVLEGFQ RAQSGAR
|
|---|
| |