| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4602 |
|---|
| Symbol | |
|---|
| ID | 1041823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5221748 |
|---|
| End bp | 5222587 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637148000 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | NP_746711 |
|---|
| Protein GI | 26991286 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0287774 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.364439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATAGAAG CGGGTTCACC CGCGAAGAGG CCGGCCCAGC CAGCAGAGAA CCGACAGATG
ACCGACACCC CCCTGGCAAC CCTCTACCAG TCCCTCGACC AGCACCGCCC CGCCACCCTC
GAGGCCCTGC TCGCCGGCGT ATCGCTGTTG CTGCCGATGC TCGACGCCAT CCCCAACGCC
GCAATCTTCA TCAAGGATTC TGCCGCCCGC TATGCGTTGG CCAACAACAC ACTGGTCCAG
CGCTGTGGCC TCAAGCGCCT GCAACCGCTG CTGGGCAAGA CCAGCGCCGA AGTGTTTCCG
GCACAGTTTG GCCCCGGCTA TACCGAGCAG GATCGACGTG TTCTCAAGGA AGGCCTGGTG
CTGGAGGACC AGTTGGAGCT GCACCTCTAC GGCAGCCGTG AGCCCGGCTG GTGCCTGACC
CACAAGCGCC CGCTGTACAA CCCTGCCGGC GAAATCATCG GCCTGGTCGG CATCTCGGTC
GACTTGCAGT CAGCCGCTGA CAGCCACCCC GCCTACCAGC GCCTGGCCGC AGTGGACGAG
CACATTCGCC AGCATTTTCA CCAGCCGATC AGCATGAGCG AGCTGACCCG CATTGCCGGT
ATTTCCGTGG CCCAGCTGGA GCGCTATTGC AAGCGGGTGT TCCACCTCAC GCCCCGGCAG
ATGATCCACA AGGCGCGCCT GGAGCATGCC CATCGCCTGC TGCATTCGGA GCTGCCGATC
ACTGAAGTGG CGATGCGCTG CGGCTACACC GACCACAGCG CCTTCAGCCG CCAGTTCAAG
CAGCTGACCG GCTTTACGCC GCGCCAGTAC CGCCAGGCTA CCGCCGATCA GCTGGCCTGA
|
|---|
| Protein sequence | MIEAGSPAKR PAQPAENRQM TDTPLATLYQ SLDQHRPATL EALLAGVSLL LPMLDAIPNA
AIFIKDSAAR YALANNTLVQ RCGLKRLQPL LGKTSAEVFP AQFGPGYTEQ DRRVLKEGLV
LEDQLELHLY GSREPGWCLT HKRPLYNPAG EIIGLVGISV DLQSAADSHP AYQRLAAVDE
HIRQHFHQPI SMSELTRIAG ISVAQLERYC KRVFHLTPRQ MIHKARLEHA HRLLHSELPI
TEVAMRCGYT DHSAFSRQFK QLTGFTPRQY RQATADQLA
|
|---|
| |