| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4474 |
|---|
| Symbol | alaS |
|---|
| ID | 1045889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 5081639 |
|---|
| End bp | 5084263 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637147874 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | NP_746585 |
|---|
| Protein GI | 26991160 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.41358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.184311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCG CAGAAATCCG TGAAGCCTTC CTTCGCTTCT TCGAAGAGCA GGGACATACC
CGAGTCGCCT CCAGTTCGCT GATCCCGAAC AACGACCCGA CCCTGCTGTT CACCAACGCA
GGCATGAACC AGTTCAAGGA CTGCTTCCTC GGTGCGGAGA AGCGCGCCTA CACGCGTGCT
GTCAGCAGCC AGAAGTGCGT GCGTGCCGGT GGCAAGCACA ACGACCTGGA AAACGTCGGT
TACACCGCGC GTCACCACAC CTTCTTCGAA ATGCTGGGCA ACTTCAGCTT CGGCGACTAT
TTCAAGCGCG ACGCCATTAC CTTTGCCTGG ACCTTCCTGA CGTCTGAGCA GTGGCTGAAC
CTGCCCAAGG AAAAGCTCTG GGTCACCGTC TACGCCACCG ACGACGAAGC CTACGACATC
TGGACCAAGG AAGTCGGCGT GCCGGCCGAG CGCATGGTGC GCATCGGCGA TAACAAGGGC
GCCCCGTACG CCTCCGACAA CTTCTGGACC ATGGGCGATA CCGGCCCGTG CGGCCCGTGC
ACCGAGATTT TCTACGATCA CGGCCCGGAT ATCTGGGGTG GTCCACCCGG CTCGCCAGAA
GAAGACGGTG ACCGCTACAT CGAGATCTGG AACAACGTCT TCATGCAGTT CAACCGCACT
GCCGACGGTG TGTTGCACCC GCTGCCAGCG CCGTCGGTGG ACACCGGCAT GGGCCTGGAG
CGTGTCAGCG CCGTGCTGCA GCACGTGCAT TCGAACTACG AGATCGACCT GTTCCAGAAC
CTGCTGGCTG CCGCAGCCAA GGCCATCGGT TGCAGCAATG ACGGCCAGGC TTCGCTGAAA
GTGGTCGCCG ACCACATCCG TTCGTGCGGC TTCCTGATTG CCGACGGCGT GCTGCCGTCC
AACGAAGGCC GTGGCTACGT GCTGCGCCGC ATCATTCGCC GCGCTTGCCG TCACGGCAAC
AAGCTGGGCG CCAAGGGCAG CTTCTTCTAC CAGATCGTTG CCGCACTGGC CGCTGAAATG
GGCGAAGCCT TCCCGGAGCT GAAGAGCCAG CAAGCGCACA TCGAGCGCGT GCTCAAGGCC
GAAGAAGAGC AGTTCGCCAA GACCCTGGAG CAGGGCCTGC GCATCCTCGA GCAAGACCTG
GCCCAGCTGA AAGGCGACGT GGTACCGGGC GACGTGGTGT TCAAGCTGTA CGACACCTAT
GGCTTCCCGA TGGACCTGAC TGCCGACATC GCTCGTGAGC GTGAGCTGAC CATCGACGAA
GCCGGCTTCG AGCGTGAAAT GGACGCCCAG CGTGAGCGCG CCCGCTCCGC CAGCGCCTTC
GGCATGGATT ACAACAGCCT GGTCAAGGTC GACAGCGCCA CCGAGTTCCT CGGTTACGAC
GCCACCGAGG GCCAGGGCAA GATCATCGCC CTGTACAAGG ACGGCCAATC CGTTGACCAG
CTGGGTGAAG GCGAGGAGGG CGTTGTGGTG CTCGACCGCA CGCCGTTCTA CGCCGAGTCC
GGTGGTCAGG TGGGTGATAC CGGCTTCTTG CAGGCTGGCG CTGCACGCTT TGACGTGCGC
GACACCACCA AGACCGGCGG TGCCTTCCTG CACCACGGCG TGGTGACCAG CGGTGCGCTG
GTGATCGGTT CGCCCGTCGA GGCCAAGGTC GATGCCGACG TACAGCACGC CACCTCGTTG
AATCACTCCG CTACCCACCT GCTGCACGAA GCATTGCGCC AGGTACTGGG CGAGCATGTA
CAGCAGAAGG GCTCGCTGGT CGACAGCCAG CGCCTGCGTT TCGACTTCAG CCACTTCGAA
GCGGTGAAGC CGGAGCAGAT CAAGCAGCTG GAAGACATCG TCAACCGCGA GATTCGCAAG
AATACCCCGG TTGAAACCGA ACTGACCGAC ATCGAAACTG CCAAGGCCAA AGGCGCAATG
GCGCTGTTCG GCGAGAAATA CGGCGACACC GTGCGTGTGC TGAGCATGGG CGGTGATTTT
TCGGTGGAAT TGTGCGGCGG TATCCACGCC AAGCGCACCG GTGACATCAG CCTGTTCAAG
ATCATCAGCG AAGGCGGCGT AGCCTCTGGC GTGCGCCGTA TCGAAGCCGT AACCGGTGCC
GCTGCGCTGG CTTACCTGAA CGCTGCCGAA GAGCAGGTCA AGGAAGCCGC ACAACTGGTC
AAGGGTAACC GCGACAACCT GATCGACAAG CTGTCGGCTG TGCTTGAGCG CAACCGCCAG
CTGGAGAAGC AGCTGGAACA GCTGCAGGCC AAGGCCGCCA GCGCCGCCGG GGACGATCTC
TCCAACGCGG CCGTTGAGGT CAAGGGTGCC AAGGTCCTCG CCGCCCGCCT GGATGGGCAG
GATGGCAAGG CCCTGCTGGC CCTGGTCGAT CAGCTGAAGA ACAAGCTCGG CCACGCAGTG
ATCCTGCTGG GCAGCGAGCA TGAGGGCAAG GTTGTGCTGG TGGCCGGCGT GACCAAGGAC
CTCTCCAGCC AACTCAAGGC TGGCGATCTG ATGAAACAAG CCGCTGCGGC GGTGGGTGGC
AAGGGCGGCG GCCGTCCGGA CATGGCCCAG GGTGGTGGCG TCGACGTCGC TGCCCTGGAC
CAGGCCCTGG CGCTGGCCGT GCCATTCGCA GAGCAGGGAC TTTGA
|
|---|
| Protein sequence | MKSAEIREAF LRFFEEQGHT RVASSSLIPN NDPTLLFTNA GMNQFKDCFL GAEKRAYTRA
VSSQKCVRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKRDAITFAW TFLTSEQWLN
LPKEKLWVTV YATDDEAYDI WTKEVGVPAE RMVRIGDNKG APYASDNFWT MGDTGPCGPC
TEIFYDHGPD IWGGPPGSPE EDGDRYIEIW NNVFMQFNRT ADGVLHPLPA PSVDTGMGLE
RVSAVLQHVH SNYEIDLFQN LLAAAAKAIG CSNDGQASLK VVADHIRSCG FLIADGVLPS
NEGRGYVLRR IIRRACRHGN KLGAKGSFFY QIVAALAAEM GEAFPELKSQ QAHIERVLKA
EEEQFAKTLE QGLRILEQDL AQLKGDVVPG DVVFKLYDTY GFPMDLTADI ARERELTIDE
AGFEREMDAQ RERARSASAF GMDYNSLVKV DSATEFLGYD ATEGQGKIIA LYKDGQSVDQ
LGEGEEGVVV LDRTPFYAES GGQVGDTGFL QAGAARFDVR DTTKTGGAFL HHGVVTSGAL
VIGSPVEAKV DADVQHATSL NHSATHLLHE ALRQVLGEHV QQKGSLVDSQ RLRFDFSHFE
AVKPEQIKQL EDIVNREIRK NTPVETELTD IETAKAKGAM ALFGEKYGDT VRVLSMGGDF
SVELCGGIHA KRTGDISLFK IISEGGVASG VRRIEAVTGA AALAYLNAAE EQVKEAAQLV
KGNRDNLIDK LSAVLERNRQ LEKQLEQLQA KAASAAGDDL SNAAVEVKGA KVLAARLDGQ
DGKALLALVD QLKNKLGHAV ILLGSEHEGK VVLVAGVTKD LSSQLKAGDL MKQAAAAVGG
KGGGRPDMAQ GGGVDVAALD QALALAVPFA EQGL
|
|---|
| |