| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_4060 |
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| Symbol | |
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| ID | 1042139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4583595 |
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| End bp | 4585580 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637147467 |
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| Product | alpha-amylase family protein |
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| Protein accession | NP_746186 |
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| Protein GI | 26990761 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.203382 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.586391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAACG ATCACCCGGA CCAGGCCATT AGCCTGGCCC AGGCGCTGTT GGCGCCACGC
ATCGTGATCG AAGACACCCA ACCCGTGCTC GACGCCGGCA GCTTCGCCGC CAAGGCCGTC
AGCGGCCAGC CTGTGGCCGT CAGCACCAAG GCCTACAGCG ACGGCCACGA CCGCCTGGCG
GTGATGCTCA ACTGGCGCCA GGCCCACAGC CGGCGCTGGC ATTGCGTGCC GATGCAGTCG
GCGGGCAACG ACCTGTGGCA GGCCGAATTC ACCCCCACCG AGCTGGGCCC GCACCGGTTC
AGTATCGAGG CCTGGATCGA CCCGTTTGCC ACCTATTGCC ACGATCTGGA GAAGAAGTAC
CACGCCGGCG TCGAGGTAAA ACTGGAACTG GAAGAAGGCC GCTTGATGCT GGGCAAAGGC
ATCGAGCTGT GCAGCGGCGC CCTGCGCGAG GCGCTCGAGG CTGTGCAGAG CCGCCTGGCC
ACGCTCAGTA CCGATGATCA GGTGGCCGTG TTTCTCGACC CGACCACCGC CCGCCTCATG
GGTGAAGCCG AACACCGTAG CTACCTGACC CGCAGTCCTG ATTTCCCCCT TGATGTCGAC
CGCCCGGCCG CATTGTTCGC CAGCTGGTAC GAGCTGTTCC CGCGCTCGAT TACCGACGAC
CCGCAGCGTC ACGGCACCTT CAACGACGTG CACGAACGGC TGCCGATGAT CCGCGACATG
GGCTTCGACG TCCTGTACTT CCCGCCCATC CACCCCATCG GCATGCAGCA TCGCAAGGGC
CGCAACAACG CCCTCAAGGC CGAGCCGGGC GACCCGGGTA GCCCGTATGC CATTGGCAGC
CCGGAGGGCG GCCACGAGGC GATTCACCCG CAACTGGGCA GCCGCGATGA CTTCCGTCGA
CTGGTGGCTG CGGCGGCGGA ACACGGCCTG GAAATCGCCC TCGATTTCGC CATCCAGTGC
TCTCAGGACC ACCCCTGGCT CAAGGAGCAC CCGGGCTGGT TCAGCTGGCG CCCGGACGGC
ACCATCCGCT ACGCCGAAAA CCCGCCGAAA AAGTACCAGG ACATCGTCAA CGTCGATTTC
TATGCGCCAG AGGCCGTGCC TTCGCTGTGG CTCGCCCTGC GCGATGTGGT GGTCGGCTGG
GTCGAGGAGG GCGTCAAGAC CTTCCGTGTC GACAACCCGC ACACCAAGCC GTTGCCGTTC
TGGCAATGGC TGATCGCCAA TGTGCGCAGC CAGCACCCCG ACGTCATCTT CCTCGCCGAA
GCCTTTACCA AGCCGGCGAT GATGGCGCGC CTGGGCAAGG TCGGCTACGC ACAGAGCTAT
ACCTATTTCA CCTGGCGCAA CCACAAGCAG GAGCTGCGCG AATATTTCGA GCAGCTCAAT
CAGCCGCCGT GGAGCCAGTG CTACCGGCCC AACTTCTTCG TCAATACACC GGACATCAAC
CCGTTTTTCC TGCACACCTC AGGCCGCGCA GGTTTCCTGA TCCGTGCCGC GCTGGCGACC
ATGGGCTCAG GCTTGTGGGG CATGTATTCG GGCTTCGAGC TGTGCGAGGG CACGCCGTTG
CCGGGCAAGG AGGAGTACCT GGATTCGGAG AAGTACGAAA TCCGCCCACG CGATTTCACC
CAGCCCGGCA ACATCATCGC CGAGATCGCC CAGCTCAACC GTATTCGCCG GCAGAACCGC
GCCTTGCAAA CCCACCTGGG CGTGGCCTTC TTCAATTGCT GGAACGACAA CATCCTGTAC
TTCGCCAAGC GTACGCCCGA GCGGGACAAC TACATCCTGG TGGCCGTCAG CCTCGACCCG
CACAACGCCC AGGAGGCGCA CTTCGAGTTG CCCCTGTGGG AGTTGGGGCT GGACGACAAC
GCCGAAACCC AGGGTGAAGA CCTGATGAAC GGCCACCGCT GGTCGTGGTA CGGCAAGACC
CAATGGATGC GCATAGAGCC CTGGCACCTG CCGTTCGGCA TCTGGCGCAT CGAAAAAGCC
CGTTAA
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| Protein sequence | MANDHPDQAI SLAQALLAPR IVIEDTQPVL DAGSFAAKAV SGQPVAVSTK AYSDGHDRLA
VMLNWRQAHS RRWHCVPMQS AGNDLWQAEF TPTELGPHRF SIEAWIDPFA TYCHDLEKKY
HAGVEVKLEL EEGRLMLGKG IELCSGALRE ALEAVQSRLA TLSTDDQVAV FLDPTTARLM
GEAEHRSYLT RSPDFPLDVD RPAALFASWY ELFPRSITDD PQRHGTFNDV HERLPMIRDM
GFDVLYFPPI HPIGMQHRKG RNNALKAEPG DPGSPYAIGS PEGGHEAIHP QLGSRDDFRR
LVAAAAEHGL EIALDFAIQC SQDHPWLKEH PGWFSWRPDG TIRYAENPPK KYQDIVNVDF
YAPEAVPSLW LALRDVVVGW VEEGVKTFRV DNPHTKPLPF WQWLIANVRS QHPDVIFLAE
AFTKPAMMAR LGKVGYAQSY TYFTWRNHKQ ELREYFEQLN QPPWSQCYRP NFFVNTPDIN
PFFLHTSGRA GFLIRAALAT MGSGLWGMYS GFELCEGTPL PGKEEYLDSE KYEIRPRDFT
QPGNIIAEIA QLNRIRRQNR ALQTHLGVAF FNCWNDNILY FAKRTPERDN YILVAVSLDP
HNAQEAHFEL PLWELGLDDN AETQGEDLMN GHRWSWYGKT QWMRIEPWHL PFGIWRIEKA
R
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