Gene PP_3933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_3933 
Symbol 
ID1046632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp4438264 
End bp4439025 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content64% 
IMG OID637147343 
Producthypothetical protein 
Protein accessionNP_746063 
Protein GI26990638 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000513433 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0196237 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGATA TTGCTGTGCT TTCTGTGTTC GCCTTCGCCG CTGGGTTGAT CGACGCCGCG 
GTGGGTGGCG GCGGGCTGAT CCAGATCCCG GCCTTGTTCA ACGTGTTGCC CTCCGCGCAA
CCGGCCGCCT TGCTCGGCAG CAACAAACTG GCGTCCGTGT GCGGCACGGC CTTCGCGGCC
CGCTCGTTCA TCCGTAAAGT GACGCTGGAT TGGGGGTTGA TCGTACCGGC GGCACTCAGT
GCCTTTGTCA TGTCGTTCGC GGGGGCCGCC ACGGTGTCGC TGGTACCCCC CAGCGTGATG
CGTCCGGCGG TGCTGGTGCT GATCGTGCTG ATGGCTGTCT ACACCTTCTG CAAGAAGGAC
TTCGGCACCT TGCACACACC TGCCCAGGTC GGCCGCAAGG AGCAGTGCCT GGCAGTGCTG
ATCGGCGGTG CTATCGGCTT CTACGATGGC CTGTTCGGCC CGGGCACCGG TAGCTTCCTG
ATCTTCCTGT TCATCCGCTT CTTTGCCCTG GACTTCCTGC ACGCCTCGGC TTCGGCCAAG
GTGGTGAACA TTGCCACCAA CCTGGCGGCG CTGGTGTTCT TCGTGCCGAC GGGCAACGTG
CTGTACGCCA TAGCCTTGCC CATGGCAGTG TGCAACATTC TCGGCGCGCT GACCGGTACC
TGGCTGGCGG TACGCAAGGG TGCCGGGTTT GTCCGCGGGC TGTTCCTGGT GCTGTTGTGT
GTGCTGATCG CCAAGCTGTC GTGGGACCTG CTGGCCGGCT AG
 
Protein sequence
MMDIAVLSVF AFAAGLIDAA VGGGGLIQIP ALFNVLPSAQ PAALLGSNKL ASVCGTAFAA 
RSFIRKVTLD WGLIVPAALS AFVMSFAGAA TVSLVPPSVM RPAVLVLIVL MAVYTFCKKD
FGTLHTPAQV GRKEQCLAVL IGGAIGFYDG LFGPGTGSFL IFLFIRFFAL DFLHASASAK
VVNIATNLAA LVFFVPTGNV LYAIALPMAV CNILGALTGT WLAVRKGAGF VRGLFLVLLC
VLIAKLSWDL LAG