| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3845 |
|---|
| Symbol | |
|---|
| ID | 1046720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 4368119 |
|---|
| End bp | 4369228 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637147254 |
|---|
| Product | ABC transporter, periplasmic polyamine-binding protein, putative |
|---|
| Protein accession | NP_745975 |
|---|
| Protein GI | 26990550 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.803653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.545776 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA TTCGTTACAT GCAATTCGCG CTGGTCTCTC TGTTCAGTTT TGGCGTGGTT
TGCGCCGAGG CCGGTGACGC TCAAAAGCCA AGTGTCCATA TCTACAACTG GTATGACTAC
ATTGCCCCGA ACACCGTGAA AGACTTCCAG AAAGAAGCAG GCGTCAGCGT GGTGTACGAC
GTGTTCGACA ACAGTGAGGT CATGCAAAGC AAACTGATGG CTGGCCGCAG TGGTTATGAC
GTTGTGGTTG CCAGTGCCGA CCTGCTACCG AACCTGATCA AAGCCGGTGT GCTGAAACGA
CTGGATCGCT CCAAGTTACC CAACTGGTCC CATCTCGATC CCGACGTCCT CGCCAAGTTG
CAGAGCAATG ATCCCGGAAA CAGCTACGCG GCCCCTTATT TGTGGGGGAC CACTGGCATC
GGCTATGACG CGGACAAGGT TAAGTCATTA CTCGGCCCCG ATGCGCCAGT CAATTCCTGG
GACTTGATTT TCAAGGAAGA AAATCTAGCC AAACTCCGTC AATGCGGTGT GGCCATGCTG
GACGCGCCTG GCGAGGTTAT TCCCATCGCA CTGCACTACC TTGGACTGCC ATACAACAGC
CATAACCCGG ACGATTACAA AAAAGCTCAG GAACTGCTGC TGAAGCTACG CCCCCATATT
GCCTACTTCG ATTCTTCCAG GTTCATCTCT GATCTCGCCA ATGGCAACGT CTGCGTCGTG
CTGGGCTGGG CGGGCGGTGT CTCCGACGCG CAGAAAGCCT CCGAGCTGGC TGGCAACCAT
CGAAACCTTG TCTACAGCAT TCCACGCGAA GGTGCCCCGG TGTGGGTGGA AAGTATGGTG
CAGCTCAACG ATGCGCCGAA CCCGGAGCAA GGGTTGGCCT TCATCAACTA CATGTTGCGC
CCCGAAGTCA TTGCTGAGTC ATCCAACTAC CTGAGCTATC CGAACGCGAA CAAGGATGCC
ACTGCGCTTG TAGAGAAGAA GATCCGCGAC AATCCTGGGG TATATCCGTC CAAGGATGTG
CTGTCCACGC TTTTCCCCCT GGAGCCACTG CCGCTGAAGC TGGAGCGCAT TCGGACCCGT
GCGTGGAACA CGGTCAAGAC CGGCAATTAA
|
|---|
| Protein sequence | MKRIRYMQFA LVSLFSFGVV CAEAGDAQKP SVHIYNWYDY IAPNTVKDFQ KEAGVSVVYD
VFDNSEVMQS KLMAGRSGYD VVVASADLLP NLIKAGVLKR LDRSKLPNWS HLDPDVLAKL
QSNDPGNSYA APYLWGTTGI GYDADKVKSL LGPDAPVNSW DLIFKEENLA KLRQCGVAML
DAPGEVIPIA LHYLGLPYNS HNPDDYKKAQ ELLLKLRPHI AYFDSSRFIS DLANGNVCVV
LGWAGGVSDA QKASELAGNH RNLVYSIPRE GAPVWVESMV QLNDAPNPEQ GLAFINYMLR
PEVIAESSNY LSYPNANKDA TALVEKKIRD NPGVYPSKDV LSTLFPLEPL PLKLERIRTR
AWNTVKTGN
|
|---|
| |