| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3789 |
|---|
| Symbol | |
|---|
| ID | 1046416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 4317738 |
|---|
| End bp | 4318958 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637147197 |
|---|
| Product | efflux transporter, putative |
|---|
| Protein accession | NP_745919 |
|---|
| Protein GI | 26990494 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0557908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCA TGTCCATTCT TTCGTGGTCA CGGCCACACT CGCCCTTGCA CTCGCTCCTG
CTGGGTTCCC TGCTGCACGA TGCAAGCAAG GGAATAGCCA GCCCGCTGAT GGTTCTTCTG
CTGACCACCC GCTTTGGCCT GAACAGCTGG CAGACAGGGG CGCTGCTGGG CATTTCAATG
CTGCTGGCAA CGCTGATGTC ATTGCCGGCA GGGCTGCTAT TCGACCGTTT CGCGCGATTG
CACCTTGCCA CTATCACATT GTTGCTCATG ACGCTGGCTG TAGGCCTGCT GCCCTTTGCC
CAGATCATTC TGCTCGTCAG CCTGCTACTG GTGTTCATGG AGTTCGCCGC CGCACTCTTC
GGCATTGGTC TTAAAGCGCT GCTGGCCGAT TTCGTGAGCG TGAAGCAACG CGTCTCGGCG
TTCTCCTACC GCTACATCCT GACCAACGTG GCATTCGCGA TCGGCCCTGT GCTCGGGGTC
CGGTTGGCGG AAGTCTCACT TACCCTGGCG CTTTTGGTGG CAGCGGGTGC CTGCGGGGCA
GCGATGGTGG TGATGATGTG CCTGGGCGCA AGTCAGGGCC AACCTCGCAC CTCGCTGAAG
ACAGGGGCGC CCTCATTGGC GGACGCCCTG AAAGTCTTGG GCAACGATCG AAATCTGGTT
CTCTATACCT TGGGGTCATT CTTTAACACC GTCGTTCACG GTCGCTTCAC GTTCTTCCTG
TCCCTGTGGT TGCTGTATCA GTACCCTGCC AACCAAGGTA TGGAGATGCT GTCCTGGTTG
TTGCTGACCA ACGCCATCAC GGTCATTGCA TTGCAACGCC TCGTCAGCCG TTACATCACG
CTCGAAACTT TGAACAGTCG GGTCATGATG GGCGCCCTGT TGTTTTCTAT CGGATTGCTC
GGTTTTTCGG TTTCCGAGCA ACTTACTGCC TGGTGTCTGT CCATGCTAGT TTTCACCCTT
GGCGAGCTGC TGATTCAGCC AGCGGAGTAT CTCTACATTG ACTCGATCAG CCCGCCGCCC
CTCAAAGGCA GTTATTTCGC CGCACACAAT CTGGCGAGCT TGGGGGCGGC AGTCAGCCCG
GCGTGGTGTG GATTCATACT ATCGCTCGCG GGCCCCCAGG GTTTGTGCTT CTCACTGATC
GCCTGCGTGC TGGCGGGTAG CAGCCTTTGT GCCATGCGCC CTCGACTGAC CCCGGGCAAC
TTTGCGCGGG GAGATCTTTA A
|
|---|
| Protein sequence | MQPMSILSWS RPHSPLHSLL LGSLLHDASK GIASPLMVLL LTTRFGLNSW QTGALLGISM
LLATLMSLPA GLLFDRFARL HLATITLLLM TLAVGLLPFA QIILLVSLLL VFMEFAAALF
GIGLKALLAD FVSVKQRVSA FSYRYILTNV AFAIGPVLGV RLAEVSLTLA LLVAAGACGA
AMVVMMCLGA SQGQPRTSLK TGAPSLADAL KVLGNDRNLV LYTLGSFFNT VVHGRFTFFL
SLWLLYQYPA NQGMEMLSWL LLTNAITVIA LQRLVSRYIT LETLNSRVMM GALLFSIGLL
GFSVSEQLTA WCLSMLVFTL GELLIQPAEY LYIDSISPPP LKGSYFAAHN LASLGAAVSP
AWCGFILSLA GPQGLCFSLI ACVLAGSSLC AMRPRLTPGN FARGDL
|
|---|
| |