| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3711 |
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| Symbol | |
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| ID | 1046331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 4233549 |
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| End bp | 4235060 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637147122 |
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| Product | sensory box protein |
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| Protein accession | NP_745844 |
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| Protein GI | 26990419 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0503901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGCTCG CAGCAAACCC CGACATCATG TACCGGCTGT TGATCCAGAG CGTGGTGGAT
TATGCCATCT ACCTGCTCAC CCCTGAAGGT ATCGTCGCCA ACTGGAACCC TGGCGCCCAG
CGCGCCAAGG GGTACCGTGC CGAGGAAATC GTCGGCCAGC ACTACTCGTT GTTCTACACC
GATGCCGAGC GCGCAGCCGG GTTGCCGGCA TTCAACCTGG AGCAGGCGCG CAGCACCGGA
CGCTTTGAAG AAACGGGCGC ACGCCTGCGC AAGGACGGCA CGGCCTTCCA CGCCCATGTG
GTCATCGAAG CGGTGTACGA CGATGCCGGG CAACTGGTGG GTTTCGCCAA GGTCACCCGC
GACATTTCCG AACGCCACCG CCAGGAGCTC GAACTGCTGC AGGCCAAAGA GCTGGCCGAG
CAGTACAGCC AGGAAATGGC CAAGCTTTCG CAGTTTCTCG ATTCGGTCAT TGCCAACATT
CCCGCGAGCG TCATCGTCCA GGACCTGGAA AGCCAGCGCA TCCTGTTGGC CAATCAGCAG
GCCGAACGTC TGTTCGGCGG GCCTCAGCAC AGCATGATCG GCCAGTTGCC CAGGGAATGC
CTGGCACCGG CTGCCGGTGA CTATCTGGAG CAGCAATTCG TGCGGGGTGC CCGCAGCACC
AAGGGGCACG CCGCCGAAAC CCGCGTCGAC ACCGCCCGCG GCCCACGCAC ACTGCGTAGC
CGTACCCTGC TCAGTCAAAA CCGCGAAGGG CAGGCCGATT ACGTGTTGTT CGTGGCTGAA
GACGCCACCG AAGAGCTGGC CGCCCATGCG CAGATCCACC ACATGGCGCA CCATGACGCG
CTCACCGGGT TGCCCAACCG TACGCTGTTC CACGAACGGC TACGCCAGGC CCTGTTGCGC
GGCAGCGAAA ACGCCAAGCT GACGGCTGCC CTGTGCCTGG ACCTGGACAA CTTCAAGAAC
ATCAACGACT CCCTTGGCCA TGCGTTTGGT GACAAGTTGC TACGCGAGTT GGGCAAGCGT
CTGCGCCGCG AACTGCGTGA GCACGACACC TTGGCCCGCC TGGGTGGCGA CGAGTTTGCC
GTGGTGCTGA CGGGCCTGGA GGGGCGGGAT GCCGCGTGCA ATACCGCGCA GCGCCTGATC
AAGGCCATCA GCCCGCCGTT CCGGATCGAA GGGCATCAGT TCGCGGTGGG GGTGAGCATC
GGCATCGCCA TCGCGCCTGA TGACCATGAC CAGGCAGAGC AACTGCTGGG CTACGCTGAC
ATGGCGCTGT ACCAGGCCAA GCGTAACGGC CGTAATCGTT ATGAATGCTT CGATGTCGAA
CTGGACGTTG CCGCCCGCCA GCGCCGCCTG GTGGAAACCG ACCTGCGCAC AGCGCTGCAC
CTGGGGCAGT TGCAGTTGCA CTACCAGCCG GTAGTCGATC ATCAGACCAG CAGCGTTACC
GGTTATGAGG CGCTGCTGCG CTGGGAACAC CCGACCCGTG GCATGGTCAT GCCGATGGAC
TTCATTTTCT AG
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| Protein sequence | MSLAANPDIM YRLLIQSVVD YAIYLLTPEG IVANWNPGAQ RAKGYRAEEI VGQHYSLFYT
DAERAAGLPA FNLEQARSTG RFEETGARLR KDGTAFHAHV VIEAVYDDAG QLVGFAKVTR
DISERHRQEL ELLQAKELAE QYSQEMAKLS QFLDSVIANI PASVIVQDLE SQRILLANQQ
AERLFGGPQH SMIGQLPREC LAPAAGDYLE QQFVRGARST KGHAAETRVD TARGPRTLRS
RTLLSQNREG QADYVLFVAE DATEELAAHA QIHHMAHHDA LTGLPNRTLF HERLRQALLR
GSENAKLTAA LCLDLDNFKN INDSLGHAFG DKLLRELGKR LRRELREHDT LARLGGDEFA
VVLTGLEGRD AACNTAQRLI KAISPPFRIE GHQFAVGVSI GIAIAPDDHD QAEQLLGYAD
MALYQAKRNG RNRYECFDVE LDVAARQRRL VETDLRTALH LGQLQLHYQP VVDHQTSSVT
GYEALLRWEH PTRGMVMPMD FIF
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