| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3424 |
|---|
| Symbol | xcpS-2 |
|---|
| ID | 1046352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3875506 |
|---|
| End bp | 3876717 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637146840 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | NP_745562 |
|---|
| Protein GI | 26990137 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.766631 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAGTAA GGAGAGCGGC CATGCGCTAC AGCCTCAAGG CCCTGGGTAG GCAGGGTGTG
GTGCAGTTGC AGATCGACGC CGAGGACGCC GACCAGGCCC GCCGCCAGGC CGAAGACCAG
GGCCTGCGTG TGCTCAGCCT GCGCAGCAGC GGCGGCGCGC TGCGCGGCAT GGCCTGGCGC
CGTGAAGCGG CATTCGACCT GGTGCTGTTC AGCCAGGAAC TGTCAACCTT GCTCAATGCC
GGCCTGCCGC TGATCGACGC ACTGGAAAGC CTGGCGGAGA AAAGCCCGGC AGCGACAGCG
CGCAAGGTGC TCGCCGAGCT GGTGCGTCAG CTGTACGAGG GCCGCTCGCT GTCCCAGGCG
CTGGGCCAGC AACCGCGGGT ATTCCCGCCG TTGTATGTGG CGCTGGTGCA GTCCAGCGAA
CGCACCGGTG CCCTGGGCGA CGCCCTCACC CGCTACATCA GCTATCGCCA GCGCCTGGAC
CTGGTCCGGC AGAAGCTGGT GGGTGCCTCG GTCTACCCGT TACTGCTGTT GCTGGTGGGA
GGCGGTGTGG TGCTGTTCCT GCTCGGCTAT GTGGTGCCGC GTTTCAGCCA GGTGTTCGAA
GGCATGGGCA CCGAGCTACC CTGGCTGTCA CGGGTGCTGA TGCAGGTCGG CCTGTTTCTG
CATGCCCAGC AAGCGCCACT GGCGCTGGGC ACCGTCGGTG GGGTCGCGGC GCTTTGGCTG
CTGCGCCGGC ACCCGCGTGT ACGGTACTGG GCCTCCTGCC AGCTGCGGCG CCTGCCCGCA
CTGCACCAGC GCCTGATGAT GTACGAGCTG GCGCGTTTCT ATCGCTCGCT GGGCATTCTG
CTGCAAGGCG GCATCCCCAT CCTCACCGCC ATGGGCATGG CCCGCGGCCT GCTCGGCAAC
GCAGCAGCGC AGGGCCTGGA GCAGGCCAGC CAGCGGGTGG GCGAAGGGCT GCCGCTTTCC
GATGCTCTGG CGGCCGGGCA CCTGGTGACG CCGGTATCCC TGCGCCTGCT GCGCGCAGGC
GAGCAGTCTG GCAACCTGGG CGAGATGCTG GAGCGCTGCG CCGACTTCCA TGACCAGGAA
ATCGGCCGTT GGGTGGAATG GTTCGTCAAA CTGTTCGAAC CGCTGCTGAT GACCTTCATC
GGCCTGCTGA TCGGCCTGAT CGTAATCCTC ATGTACATGC CGATCTTCGA GCTGGCCTCA
AGTATTCACT GA
|
|---|
| Protein sequence | MAVRRAAMRY SLKALGRQGV VQLQIDAEDA DQARRQAEDQ GLRVLSLRSS GGALRGMAWR
REAAFDLVLF SQELSTLLNA GLPLIDALES LAEKSPAATA RKVLAELVRQ LYEGRSLSQA
LGQQPRVFPP LYVALVQSSE RTGALGDALT RYISYRQRLD LVRQKLVGAS VYPLLLLLVG
GGVVLFLLGY VVPRFSQVFE GMGTELPWLS RVLMQVGLFL HAQQAPLALG TVGGVAALWL
LRRHPRVRYW ASCQLRRLPA LHQRLMMYEL ARFYRSLGIL LQGGIPILTA MGMARGLLGN
AAAQGLEQAS QRVGEGLPLS DALAAGHLVT PVSLRLLRAG EQSGNLGEML ERCADFHDQE
IGRWVEWFVK LFEPLLMTFI GLLIGLIVIL MYMPIFELAS SIH
|
|---|
| |