| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3182 |
|---|
| Symbol | |
|---|
| ID | 1046830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 3606849 |
|---|
| End bp | 3609113 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637146604 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | NP_745326 |
|---|
| Protein GI | 26989901 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTGTG CAGCGACCCT GGCCTTTCTC TGGGGGCTGC ACGTCACCCA GAAAGCCGCC
GCCCGACAGA ATGCACTGTC GGCCAAGGCC ATCGAGCACC TGAACCTGGC CAGCATCGTG
GGCGAAAACC TCCGACAGCT TGTCGACCGC GCCCAGGCGG TGGGTCGTGT GACCCAGGAC
GACATGAAAG CGCGGCGCCA AGGCAACCTC AGCCTGGCAG CAGACCCTGT GTTCAAGCGC
TTGAGCCTGT ACGACCGACA AGGCCGGCTG CTAGCGGCCA GCCATACCGA TGAGGCCGCC
GAGTTGCCGG CAGACTGGTT GCGCCAACTG CAGCGGCACA TTGATCGCTA CGGTTTCAAA
CCTTTCCTGC CAAGCATTAA ACCTGTCAGC CAAACCGCTG CCCTGCCCAC TTGGCGCCTG
CCCTTCCTGC TGCCGTTGAC CAATTCGACC GGCCGGGAAA TCGACAACAT TTTGCTGGTG
CATCTGGACG TCGGCTACCT GGCGGTGCTG TTCCAGTCTA TCGACCTGGG CAACAGTGGC
CTGGTGCGTC TGCTGCAGGA TGACGGCCTG GAGCGGCTGC GCATCGACAA CAGCGGCGTG
GTGACTGCCG GCGACCTATT GCAGCCCCCG CTGCCGGCGC TAAACACCGA AGCGGGCATG
CTGACCCAGT ACGTAGCGGG TGATGCCTAC CAAAGCGTGT ACCGCCGTGT ACCCGAGCAA
GGCTTCAGCG TGGTGGTCAG CCAGCGCCAG GCAGAAATCC TCGCACCCTC GACGCTGGCC
TATTCCCGGC AGTTCTGGTT GAACCTGAGC ATGACCCTGA TGATCCTGGC CAGCCTGCTA
TGGACCTTGC GCCTGCTGCG CAAGCGCCAG GAGGCGTTCG ACGCGCTGGA ACATGCCCAG
CAGGTCAATC AGCAGCTGAT CGTGCGCCTG GAGGACGAAC ATCGGCGCAG CAGCCACGCC
GCCGCCACCG ACCACCTCAG TGGCCTGCAC AACCGCCGCC AGTTCGTCGA AGTGGCCAGC
CAGGTGCTGA CTCGGCAACG TGGCAAGCGC CGACTGATGG CGATCCTGTT CATCGACATG
GACCGTTTCA AGTCGATCAA CGACTCGCTC GGCCACAAGA TTGGTGACCT GCTGCTACAG
GCTGTGGCCG GGCGTATCCA GCGCCTGCTG GAGCCCGGCG ACGAGGCTTC GCGGTTTGGC
GGCGACGAAT TCGTGGTGTT GCTGGCCGGT GAGCGCAGCG AGGAGCAGAT CAACGCCTGG
GTCCACGAAC TGGTGCAGAA GCTGTCGGCC ACCTACGCCC TGGATGGCCA AGAGGTCAAC
ACCAGCCCCA GTGTAGGGGT GAGCATCTGT CCGCGTGATG GCCAGGACAT CGACAGCCTG
ATACGCAGTG CCGATGCGGC CATGTACTCG GCCAAGCAGG CAGGGCGTGC GCAGTTTCGC
TTTTTCGACC CCTCGCTGAA CCTGGCCGAT ATCCAGGCGT TCACCCTTGA ACAGGCCTTC
GGCAGTGCCT TGGCCGAACG CCAGTTCGTG CTGCACTACC AGCCGCAGAT GCGCCTCGAC
ACCCACCAGG TGCAGGGTTA CGAGGCGCTG GTGCGCTGGG ACCACCCCGA GTTCGGCCTG
CTGTACCCGG ACCGCTTCAT CGACCTGGCC GAGCGCAGTG GCTTTATAGT CGAGCTGGGT
TGGGAAGTAC TGCAGCTGGC CTGTGAAGCC TTGTCGAGCT GGGATGCCCA AGGCCGCAAG
ACACGGCTGG CCGTCAATGT CTCCGCCCTG CAACTGCGTC AAGCCGACTT CGCTGACCGG
CTGCTGAGCA AGTTGCAGCA TCATGGCATC GCGCCTCAGC AGCTGGAGCT GGAAATTACC
GAAACCACCA TCCTCGACCC CGAAGGCACG GCGGTGGCGC ACCTGCATAC GTTGCGCGGC
GCAGGTCTGG GTATCAGTCT GGACGATTTT GGCCGTGGCT ACGCCGGCTT TGCCCACCTG
CATTCACTGC CCCTGAGCAA GCTGAAGATC GATCGTTCGC TGATCGCGGC GCTGTCCAAC
AGCCATGACG ACAGCCCAAT CGTGTCCTCC ACCATCATCC TGGCCAAGCG CCTGGGCCTG
GAAGTGGTGG CCGAGGGGGT GGAAACCCGT GAACAGGTGG TGTACCTGAA GCTTGCCGGC
TGCGATATTG CCCAGGGCTA CCACTTCAGC CGGCCACTGT CGCTGGCGCA GCTGTGGGTT
TACCCGCCCT TCAACGGTAT CGAGGACAAG GCATGCGTGT ACTGA
|
|---|
| Protein sequence | MLCAATLAFL WGLHVTQKAA ARQNALSAKA IEHLNLASIV GENLRQLVDR AQAVGRVTQD
DMKARRQGNL SLAADPVFKR LSLYDRQGRL LAASHTDEAA ELPADWLRQL QRHIDRYGFK
PFLPSIKPVS QTAALPTWRL PFLLPLTNST GREIDNILLV HLDVGYLAVL FQSIDLGNSG
LVRLLQDDGL ERLRIDNSGV VTAGDLLQPP LPALNTEAGM LTQYVAGDAY QSVYRRVPEQ
GFSVVVSQRQ AEILAPSTLA YSRQFWLNLS MTLMILASLL WTLRLLRKRQ EAFDALEHAQ
QVNQQLIVRL EDEHRRSSHA AATDHLSGLH NRRQFVEVAS QVLTRQRGKR RLMAILFIDM
DRFKSINDSL GHKIGDLLLQ AVAGRIQRLL EPGDEASRFG GDEFVVLLAG ERSEEQINAW
VHELVQKLSA TYALDGQEVN TSPSVGVSIC PRDGQDIDSL IRSADAAMYS AKQAGRAQFR
FFDPSLNLAD IQAFTLEQAF GSALAERQFV LHYQPQMRLD THQVQGYEAL VRWDHPEFGL
LYPDRFIDLA ERSGFIVELG WEVLQLACEA LSSWDAQGRK TRLAVNVSAL QLRQADFADR
LLSKLQHHGI APQQLELEIT ETTILDPEGT AVAHLHTLRG AGLGISLDDF GRGYAGFAHL
HSLPLSKLKI DRSLIAALSN SHDDSPIVSS TIILAKRLGL EVVAEGVETR EQVVYLKLAG
CDIAQGYHFS RPLSLAQLWV YPPFNGIEDK ACVY
|
|---|
| |