| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3122 |
|---|
| Symbol | |
|---|
| ID | 1046775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3533320 |
|---|
| End bp | 3534018 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637146544 |
|---|
| Product | 3-oxoacid CoA-transferase subunit A |
|---|
| Protein accession | NP_745266 |
|---|
| Protein GI | 26989841 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.408127 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGAC TGGACAAGCG CGTTGCAACC TATGAGCAGG CCCTCGAAGG CCTGACCGAC
AACATGACGG TACTGGCCGG TGGTTTCGGC CTGTGCGGCA TCCCGGAAAA CCTTATCAGC
GAAATCAAGC GGCGCGGCGT CAAGGGCCTG ACCGTGGTTT CCAACAACTG CGGCGTGGAC
GGTTTTGGTC TGGGCGTGCT GCTGGAAGAC CGGCAGATTC GCAAGATGAT CGCCTCCTAC
GTGGGCGAAA ACGCCGAGTT CGAACGCCAG TTGCTCAGTG GCGAGCTGGA AGTGGAACTG
ACCCCACAGG GCACCCTCGC CGAAAAAATG CGCGCAGGTG GTGCCGGCAT TCCGGCGTTC
TACACCGCCA CCGGCTATGG CACCCCGGTT GCCGATGGCA AGGAAGTCCG CGAGTTCAAG
GGCCGCAAGT ACATCCTGGA AGAATCCATC ACCGGTGACT TCGCCATCGT CAAGGGCTGG
AAGGCCGACC ACTACGGCAA CGTGGTGTAT CGCAACACTG CGCAAAACTT CAACCCGCTG
GCGGCCACCG CCGGCAAGAT CACCGTGGTC GAAGTGGAAG AAATCGTCGA GCCCGGCGTG
CTGCTGCCAA GCGAAATCCA CACCCCGGGC ATCTATGTGG ACCGTGTCAT CGTCGGCACC
TTCGAAAAGC GTATCGAAAA GCGCACCGTC AAGGCCTGA
|
|---|
| Protein sequence | MAGLDKRVAT YEQALEGLTD NMTVLAGGFG LCGIPENLIS EIKRRGVKGL TVVSNNCGVD
GFGLGVLLED RQIRKMIASY VGENAEFERQ LLSGELEVEL TPQGTLAEKM RAGGAGIPAF
YTATGYGTPV ADGKEVREFK GRKYILEESI TGDFAIVKGW KADHYGNVVY RNTAQNFNPL
AATAGKITVV EVEEIVEPGV LLPSEIHTPG IYVDRVIVGT FEKRIEKRTV KA
|
|---|
| |