Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3076 |
Symbol | |
ID | 1043817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 3460355 |
End bp | 3461371 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637146498 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | NP_745220 |
Protein GI | 26989795 |
COG category | [R] General function prediction only |
COG ID | [COG4239] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.588889 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTATCGC CCCTGTCGCG CCGTCGCCTG CAACGTTTTC GCCGCCACCG CCTGGGCTGG GTGTCGCTGT GGTTGTTTGC CGGCCTTCTG CTGCTCAGCC TTTGCGCCGA ACTGGTGGCC AACGACAAGC CACTGCTGCT GGGCTACAAG GGCAATGTGT ACGTTCCGGC GCTCAAACGC TACACCGAGC AGCAGTTCGG CGGGCAACTG CCGTTTCAGC CCGACTACCG CAGCGCCTAT GTGCGCCAAC TGATCGCTGA ACAGGGTGGC TGGATGCTGT TCGCACCTAT CCCGTTCAGT GCCGACACAC CTAATTACGA CCTGCAGGTG CCCACCCCCA GCCCGCCCAG CGCCAGCAAC TGGCTAGGCA CCGACGACCA AGGCCGTGAC GTGCTGGCGC GGGTGCTTTA TGGCACGCGG GTATCGCTGC TGTTCGCCTT TGCCCTGACC GTGGTCAGTG TGCTCATTGG CGTGGCGGCG GGCGCCCTGC AAGGCTACCA CGGGGGCTGG GTCGACCTGT TCGGCCAGCG CTTGCTGGAA GTATGGTCGG GGTTGCCAGT GTTGTATCTG TTGATCATCC TCAGCGGTTT CGTCGAGCCG GATTTCTGGT GGCTGCTGGG GATCATGGCG CTGTTCTCCT GGCTGACCCT GGTCGACGTC GTGCGCGCCG AGTTCCTGCG TGGGCGCAAC CTGGAGTATG TAAAGGCAGC GCGGGCGTTG GGGTTACCGG ACAGTCAGGT GATGTTGCGG CATATCTTGC CCAATGCCAT GAATGCCACG CTGACCTATG TGCCGTTCAT GCTGACCGGG GCGATCACCA CACTGACCGC GCTGGACTTT CTGGGCTTTG GCATGCCAGC GGGCAGCGCC TCGCTGGGCG AGCTGGTGAC CCAGGGCAAG CAGCACCTGG AGGCACCGTG GTTGGGCTTT ACCGCGTTCT TTGCACTGGC GGTGATCTTG TCACTGCTGG TGTTTATCGG GGATGCCTTG CGTGAGGCGT TTGACCCCCG ACGATGA
|
Protein sequence | MLSPLSRRRL QRFRRHRLGW VSLWLFAGLL LLSLCAELVA NDKPLLLGYK GNVYVPALKR YTEQQFGGQL PFQPDYRSAY VRQLIAEQGG WMLFAPIPFS ADTPNYDLQV PTPSPPSASN WLGTDDQGRD VLARVLYGTR VSLLFAFALT VVSVLIGVAA GALQGYHGGW VDLFGQRLLE VWSGLPVLYL LIILSGFVEP DFWWLLGIMA LFSWLTLVDV VRAEFLRGRN LEYVKAARAL GLPDSQVMLR HILPNAMNAT LTYVPFMLTG AITTLTALDF LGFGMPAGSA SLGELVTQGK QHLEAPWLGF TAFFALAVIL SLLVFIGDAL REAFDPRR
|
| |