| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_2148 |
|---|
| Symbol | mfd |
|---|
| ID | 1045003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 2451666 |
|---|
| End bp | 2455115 |
|---|
| Gene Length | 3450 bp |
|---|
| Protein Length | 1149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637145562 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | NP_744297 |
|---|
| Protein GI | 26988872 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0740298 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGTTC TGCGCCTACC GCAAATGTCG GCCACGGCCG GCAAACAAAC CTGGGGCAAC
CTGCCCGGTG CCGCCCTCAG CCTTGCCATC GCCGAAGCCG CCAGCAGCGC TGGCCGCTTC
ACCCTGCTGC TGACGGCCGA CAGCCAGGCC GCCGACCGTC TGGAGCAGGA GCTGCGCTTC
TTTGCCCCAG ACCTGCCCGT GCTGCCGTTC CCCGATTGGG AAACCCTGCC CTACGACCTG
TTCTCGCCGC ACCAGGACAT CATCTCCCAG CGCATCGCCA GCCTGTACCG TCTGCCGGAG
CTGAGCCACG GCATCCTCGT GGTGCCGATC ACCACCGCCC TGCACCGCCT GGCACCCACG
CGTTTTCTGC TGGGCAGCAG CCTGGTGCTG GATGTGGGCC AGACCATCGA CGTGGAACAG
ATGCGCCTGC GCCTGGAGGC CAGCGGTTAT CGTTGTGTCG ACACCGTCTA CGAGCATGGC
GAGTTCGCCG TGCGCGGCGC GCTGATCGAC CTGTTCCCGA TGGGCAGCAA ACTGCCCTAC
CGCATCGACC TGTTCGATAA CGAGATCGAG ACGCTGCGCA CCTTCGACCC CGAGACCCAG
CGCTCGATCG ACAAGGTGGA TTCGGTGCGC CTGCTGCCAG CACGCGAATT CCCGATGCAG
AAGGAAGAAG TGACCCGCTT CAAGGCACGC TTTCGCGAGC GCTTCGACGT CGACTTCCGC
CGCAGTGCAA TCTTCCAGGA CCTGGCCAGC GGCATCATCC CCGCCGGTAT CGAGTACTAC
CTGCCACTGT TCTTCGAAGA AACCTCGACC CTGTTCGACT ACCTGCCGAC CGACACCCAG
GTGTTCTCGC TACCCGGTGT GGAACAGGCC GCCGAGCACT TCTGGAACGA CGTGCGCGGG
CGTTATGAAG ACCGCCGCGG CGACCTCAGC CGGCCGCTGT TGCCGCCGGC CGAGCTGTTC
CTGCCGGTGG AAGATTGCTT CGCCCGGCTC AAGCAGTGGC CCCGGGTGGT GGTCAGCAGC
GAAGAGCTGG AGCCTGGCGT GGGCCGCGAG CGCTTCCCGG CGCGCGCCCT GCCCAACCTG
GCCATCGAGG CCAAGGCCAA CCAGCCGCTG GCCGAGCTGG CCAACTTCCT CGACCAGTTC
CCCGGCCGCG TGCTCTTCAC TGCCGAATCA GCGGGCCGCC GGGAAGTGCT GCTGGAGCTG
CTCGAACGGC TGAAGCTGCG CCCGCATACC GTCGAAGGCT GGGACGACTT CATTACCGGT
GCCGAGCGCC TGGCGATCAC CATCGCCCCA CTGGACGACG GCCTGCTGCT GGACGATCCA
GGGCTGGCGC TGATTGCCGA AAGCCCACTG TTCGGCCAGC GGGTGATGCA GCGCCGGCGC
CGTGACAAGC GCGGCGAAAC CGCCAACGAC GCGGTCATCA AGAACCTCAC CGAGCTGCGC
GAAGGTGCGC CGGTGGTGCA CATCGACCAT GGCGTCGGCC GCTACCTGGG CCTGGCCACG
CTGGAAATCG ACGGCCAGGC CGCCGAATTC CTGACGCTGG AATACGCCGA GAACGCCAAG
CTGTATGTGC CGGTGGCCAA CCTGCACCTG ATCGCCCGCT ACACCGGCAG CGACGACGCC
CTGGCACCGC TGCACCGGCT GGGTTCGGAG GCCTGGCAGA AAGCCAAGCG CAAGGCCGCC
GAACAGGTCC GCGACGTGGC CGCCGAACTG CTCGACATCT ATGCTCGCCG CGCCGCGCGC
AAGGGCTACG CGTTTGCCGA CCCGTCGGCT GACTACGCCA CCTTCAGCGC CGGCTTCCCG
TTCGAGGAGA CCCCGGACCA GCAGGCCGCC ATCGAGGCCG TGCGCGCCGA CATGCTGGCA
CCCAAGCCAA TGGACCGCCT GGTCTGTGGC GACGTGGGCT TCGGCAAGAC CGAAGTGGCC
ATGCGCGCGG CGTTCATCGC CGTGCACAGT GGCCGCCAGG TGGCCGTGCT GGTGCCCACC
ACCCTGCTTG CCCAGCAGCA TTACAACAGC TTCCGCGACC GCTTTGCCGA CTGGCCCGTG
ACCGTGGAAG TGATGAGCCG CTTCAAGTCG GCCAAAGAAG TGGCCGCCGC CGCCGCGGAC
CTTGCCGAAG GCAAGATCGA CATCCTCATC GGCACCCACA AGCTGCTGCA GGACGACGTA
CGCTTCAAGG ACCTGGGCCT GGCCATCATC GATGAAGAGC ACCGCTTTGG CGTGCGCCAG
AAAGAACAGC TGAAGGCGCT GCGCAGCGAG GTCGATATCC TCACCCTGAC CGCCACGCCG
ATTCCGCGCA CGCTGAACAT GGCGGTGGCG GGCATGCGCG ACCTGTCGAT CATCGCCACG
CCGCCAGCAC GCCGCCTGTC TGTGCGCACC TTCGTCATGG AACAGAACAA GAGCACGGTC
AAGGAGGCGC TGCTGCGCGA ACTGTTGCGC GGTGGCCAGG TGTACTACCT GCACAACGAT
GTGAAAACCA TCGAAAAATG CGCCGCCGAC CTTGCCGAGC TGGTGCCCGA GGCACGCATC
GGCATCGGCC ACGGGCAAAT GCGCGAACGC GAGCTGGAAC AGGTGATGAG CGATTTCTAC
CACAAGCGTT TCAACGTGCT GGTGGCCTCG ACCATTATCG AAACCGGTAT CGACGTGCCC
AGCGCCAACA CCATCGTCAT CGAGCGCGCC GACAAGTTCG GCCTGGCCCA GCTGCACCAG
CTGCGTGGCC GGGTTGGCCG TAGTCACCAC CAGGCCTACG CCTACCTGCT CACACCTACC
CGTCAGAAGG TGAGCGCCGA CGCCGAAAAG CGCCTGGAGG CGATCGCCAA CACGCAAGAC
CTTGGCGCAG GCTTTGTGCT GGCCACCAAC GACCTGGAAA TCCGCGGTGC CGGCGAGCTG
CTGGGCGAAG GCCAGAGCGG GCAGATCCAG GCAGTGGGCT TCACCCTGTA CATGGAAATG
CTCGAACGTG CGGTCAAGGC AATCCGAAAA GGTACCCAGC CGAACCTTGA GCAACCCCTG
GGTGGCGGCC CGGAGATCAA CCTGCGCCTG CCGGCACTGA TCCCAGAGGA CTACCTGCCT
GACGTGCATG CGCGCCTGAT CCTGTACAAA CGCATTGCCT CGGCTGCCGA CGAAGAGGGT
CTCAAGGACT TGCAGGTCGA GATGATCGAC CGCTTCGGCT TGTTGCCAGA GCCGACCAAG
AACCTGATGC GCCTGACGTC ACTCAAGCTG CACGCGGAAA AGCTCGGCAT CAAGAAAGTC
GATGCGGGGC CCAACGGTGG CAAGCTCGAG TTCGAAGCCG AAACACCGGT CGACCCACTG
ACCCTGATCA AGCTGATCCA GGGTCAGCCC AAACGTTACA AGTTCGAAGG GGCCACCCAG
TTCCGCTTCC TGGTACCGAT GGAACGCCCC GACGAACGTT TCAATACCCT GGAGGCGCTG
TTCGAGCGCC TGACCCCACA GCCTGCCTAA
|
|---|
| Protein sequence | MSVLRLPQMS ATAGKQTWGN LPGAALSLAI AEAASSAGRF TLLLTADSQA ADRLEQELRF
FAPDLPVLPF PDWETLPYDL FSPHQDIISQ RIASLYRLPE LSHGILVVPI TTALHRLAPT
RFLLGSSLVL DVGQTIDVEQ MRLRLEASGY RCVDTVYEHG EFAVRGALID LFPMGSKLPY
RIDLFDNEIE TLRTFDPETQ RSIDKVDSVR LLPAREFPMQ KEEVTRFKAR FRERFDVDFR
RSAIFQDLAS GIIPAGIEYY LPLFFEETST LFDYLPTDTQ VFSLPGVEQA AEHFWNDVRG
RYEDRRGDLS RPLLPPAELF LPVEDCFARL KQWPRVVVSS EELEPGVGRE RFPARALPNL
AIEAKANQPL AELANFLDQF PGRVLFTAES AGRREVLLEL LERLKLRPHT VEGWDDFITG
AERLAITIAP LDDGLLLDDP GLALIAESPL FGQRVMQRRR RDKRGETAND AVIKNLTELR
EGAPVVHIDH GVGRYLGLAT LEIDGQAAEF LTLEYAENAK LYVPVANLHL IARYTGSDDA
LAPLHRLGSE AWQKAKRKAA EQVRDVAAEL LDIYARRAAR KGYAFADPSA DYATFSAGFP
FEETPDQQAA IEAVRADMLA PKPMDRLVCG DVGFGKTEVA MRAAFIAVHS GRQVAVLVPT
TLLAQQHYNS FRDRFADWPV TVEVMSRFKS AKEVAAAAAD LAEGKIDILI GTHKLLQDDV
RFKDLGLAII DEEHRFGVRQ KEQLKALRSE VDILTLTATP IPRTLNMAVA GMRDLSIIAT
PPARRLSVRT FVMEQNKSTV KEALLRELLR GGQVYYLHND VKTIEKCAAD LAELVPEARI
GIGHGQMRER ELEQVMSDFY HKRFNVLVAS TIIETGIDVP SANTIVIERA DKFGLAQLHQ
LRGRVGRSHH QAYAYLLTPT RQKVSADAEK RLEAIANTQD LGAGFVLATN DLEIRGAGEL
LGEGQSGQIQ AVGFTLYMEM LERAVKAIRK GTQPNLEQPL GGGPEINLRL PALIPEDYLP
DVHARLILYK RIASAADEEG LKDLQVEMID RFGLLPEPTK NLMRLTSLKL HAEKLGIKKV
DAGPNGGKLE FEAETPVDPL TLIKLIQGQP KRYKFEGATQ FRFLVPMERP DERFNTLEAL
FERLTPQPA
|
|---|
| |