Gene PP_1986 details

Gene Information

• Locus tag: PP_1986
• Symbol: leuD
• ID: 1043040
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida KT2440
• Kingdom: Bacteria
• Replicon accession: NC_002947
• Strand: +
• Start bp: 2252097
• End bp: 2252741
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637145397
• Product: isopropylmalate isomerase small subunit
• Protein accession: NP_744137
• Protein GI: 26988712
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.373676
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.00883462
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAAGCCT TTACCCAGCA CACTGGCATC GTCGCACCGT TGGACCGTGC CAACGTCGAC 
ACCGACCAGA TCATCCCCAA GCAGTTCTTG AAGTCGATCA AGCGCACTGG CTTTGGCCCG 
AACCTGTTCG ACGAGTGGCG TTACCTGGAC GTGGGTCAGC CCTACCAGGA CAACAGCAAG 
CGCCCGCTCA ACGAAGAGTT CGTGCTCAAC CACGCGCGCT ACCAAGGTGC CAGCGTGTTG 
CTGGCGCGGG AAAACTTTGG TTGCGGCTCC AGCCGTGAGC ATGCCCCCTG GGCGCTGGAC 
GAGTACGGCT TCCGCAGCAT CATTGCGCCG AGCTTTGCCG ACATTTTCTT CAACAACAGC 
TTCAAGAACG GCTTGCTGCC GATCATTCTC AGCGATGAGG AAGTCGACGA GCTGTTCAAG 
CAGGTCGAAG CCAACCCGGG CTACCAGCTG ACCATCGACC TGCAGGCGCA GGCGGTGACC 
CGCCCGGATG GCAAGGTGCT GCACTTCGAG ATCGATGCGT TCCGCAAGCA CTGCCTGCTC 
AACGGTCTGG ACGATATCGG CCTGACCTTG CAGGACAGCG ACGCGATCAA GGCCTTCGAA 
GCCAAGCACC GCGCCAGCCA GCCTTGGCTG TTCCGTGATG CCTGA 

 

Protein sequence

MKAFTQHTGI VAPLDRANVD TDQIIPKQFL KSIKRTGFGP NLFDEWRYLD VGQPYQDNSK 
RPLNEEFVLN HARYQGASVL LARENFGCGS SREHAPWALD EYGFRSIIAP SFADIFFNNS 
FKNGLLPIIL SDEEVDELFK QVEANPGYQL TIDLQAQAVT RPDGKVLHFE IDAFRKHCLL 
NGLDDIGLTL QDSDAIKAFE AKHRASQPWL FRDA