11 homologs were found in PanDaTox collection
for query gene PP_1878 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_1878  hypothetical protein  100 
 
 
255 aa  513  1.0000000000000001e-145  Pseudomonas putida KT2440  Bacteria  normal  normal  0.192229 
 
 
-
 
NC_009512  Pput_3837  hypothetical protein  98.82 
 
 
280 aa  511  1e-144  Pseudomonas putida F1  Bacteria  normal  normal  0.41765 
 
 
-
 
NC_010322  PputGB1_1453  hypothetical protein  95.29 
 
 
255 aa  469  1.0000000000000001e-131  Pseudomonas putida GB-1  Bacteria  normal  normal  0.150556 
 
 
-
 
NC_010501  PputW619_1487  hypothetical protein  85.49 
 
 
255 aa  422  1e-117  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1785  hypothetical protein  71.09 
 
 
256 aa  351  8e-96  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4191  hypothetical protein  74.6 
 
 
252 aa  346  2e-94  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3609  hypothetical protein  69.84 
 
 
252 aa  337  9.999999999999999e-92  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.0064832  normal  0.347756 
 
 
-
 
NC_008463  PA14_27590  hypothetical protein  61.09 
 
 
257 aa  314  7e-85  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00959157 
 
 
-
 
NC_009656  PSPA7_2335  hypothetical protein  61.09 
 
 
257 aa  313  1.9999999999999998e-84  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0156027  n/a   
 
 
-
 
NC_009439  Pmen_1915  hypothetical protein  61.57 
 
 
255 aa  301  5.000000000000001e-81  Pseudomonas mendocina ymp  Bacteria  normal  0.0846835  normal  0.46148 
 
 
-
 
NC_007912  Sde_1168  hypothetical protein  17.87 
 
 
263 aa  52  0.000009  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000323941  hitchhiker  0.00000154553 
 
 
-
 
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