| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1655 |
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| Symbol | rumA |
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| ID | 1044387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1849456 |
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| End bp | 1850814 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637145055 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | NP_743812 |
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| Protein GI | 26988387 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.200595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.381128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA AAAAAAGCAA CAGCGGCCTG CGCTTCCAGC CGGCCGGCGG CAATCGCACC
CCGCAGGTCC CAGTGGGCAA GAAGCAGCGC CTGGACATCG AGCGCCTGGC CGGTGACGGC
CGTGGCATCG CCTTCCTCGA CGGGCGTACC TGGTTCGTCA GCGGTGCCTT GGCCGGTGAG
GCCGTGGAGG CGCGGGTGCT CAACGCCCGT GGCAAAGTGG TCGAGGCCCG CCTGGAGCGG
TTGCTGCAGG CCGCGCCCGA GCGCCGTGAG GCGCCATGTC GCTACTACGA CCGCTGCGGT
GGCTGCAACC TGCAGCACCT GCCGCACGAA GCGCAACTGG CGCTGAAGCA GCGCACACTC
GCCGAGCAGT TGCAGCGGGT GGCCGGCGTG CAACCCGAGG CGTGGGCTGC CCCCCTGAGC
GGGCCGGAAT TCGGCTACCG GCGCCGGGCC CGTGTCGCCG TGCGCTGGGA CGTCAAGGCG
CGTCAGCTGG AGGTGGGCTT CCGCGCCGAA GCCAGCCAGG ACATCATAGC CATCGACGAT
TGCGCAGTGC TGGTACAACC CTTGCAGTCC ATTTTGCGGC ACTTGCCGAC CGTGCTGCGT
TCGTTGAGCA AGCCGCAGGC GCTGGGCCAT GTAGAGCTTT TCAGTGGCAC CGCCGAGGCG
GTTCTGGTGC GCCACGTCGC GCCATTGCCG GCTGAGGACC AGGCCAGGTT GCAAGCGTTC
TGCGAGCAGG CCAACGCCCA GCTGTGGCTG CAAGGCGAAG GTGAGCCGGC GCCCGTGGAC
CCAGCGGCGC AGTTGGGCTT TGCCCTGGCC CCCTGGCAGC TGGAGCTGGC CTGGCGCCCG
GGCGATTTCG TGCAGGTGAA TGCCCAGGTC AATACGGCGA TGATCGAGCA GGCTTTGGCC
TGGCTCGCTC CACAAGCCGA CGAGCGTGTG CTGGACTTGT TCTGCGGTCT GGGCAACTTT
GCCCTGCCGC TGGCCCGCCA GGCGCGTGAG GTGGTGGCAG TGGAAGGTGT ACAGGCCATG
GTCGATCGGG CCGCGGCCAA TGCCCGGAAC AACAATGTGC ATAACGCACG GTTTTTTCAG
GCCGATTTAT CGCAGCCTTT GGCAGGCACC GGATGGGCCG CCGAGGGCTT TTCTGCGGTA
CTCTTGGATC CACCGCGCGA CGGTGCTTTC GAGGTGGTGC AAGGCATCGC CCGCCTCAAG
GCCAGAAGGC TGGTCTACGT ATCGTGCAAC CCGGCCACGC TGGCGAGAGA CGCCCAAGTG
CTGGTCGGCC AGGGGTACCG GTTAAAAAGG GCCGGGATTC TCGACATGTT TCCTCAGACG
GCGCATGTCG AGGCCATGGC GTTATTCGAA GCGGGCTAG
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| Protein sequence | MSKKKSNSGL RFQPAGGNRT PQVPVGKKQR LDIERLAGDG RGIAFLDGRT WFVSGALAGE
AVEARVLNAR GKVVEARLER LLQAAPERRE APCRYYDRCG GCNLQHLPHE AQLALKQRTL
AEQLQRVAGV QPEAWAAPLS GPEFGYRRRA RVAVRWDVKA RQLEVGFRAE ASQDIIAIDD
CAVLVQPLQS ILRHLPTVLR SLSKPQALGH VELFSGTAEA VLVRHVAPLP AEDQARLQAF
CEQANAQLWL QGEGEPAPVD PAAQLGFALA PWQLELAWRP GDFVQVNAQV NTAMIEQALA
WLAPQADERV LDLFCGLGNF ALPLARQARE VVAVEGVQAM VDRAAANARN NNVHNARFFQ
ADLSQPLAGT GWAAEGFSAV LLDPPRDGAF EVVQGIARLK ARRLVYVSCN PATLARDAQV
LVGQGYRLKR AGILDMFPQT AHVEAMALFE AG
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