| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1393 |
|---|
| Symbol | |
|---|
| ID | 1043884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1588219 |
|---|
| End bp | 1589094 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637144794 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_743552 |
|---|
| Protein GI | 26988127 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC TCCCGCCCCT GCCTGCCCTG CACACGTTTC TGGTCACCGC CCAGCACTGC
AACTTCACCC GCGCCGGGCA GCAGTTGCAT ATCACCCAGG GCGCTGTCAG CCGCCAGATT
GCAGCCCTCG AAGAACACCT CGGTTATGCC CTGTTCAAGC GCGAGGCGCG TGGGTTGAGC
CTGACCCGTG AAGGCCTGGA CTGGCTGCCA CGGGTGCAGC AGGTGTTCGC CCTGATCGAA
CAAGGGGTGC GCGAGGTGGG TGAGCACAGC ACTACCTTGC AGCTGAAGGC ACCAACCTGC
GTAATGCGCT GGCTGCTGCC GCGTCTGATG GAGTGGCAGG CACTGCGCCC GGACGTACCG
GTGGAGCTGA CCACGACCGT GCAGCACGGG GTGGATTTGC GGCGCGAGGG CTTCGATGCG
GCAGTGGTCT ACGGCGATGC ACCGAACCAC GGGCTGCAGG TGCGCAAGCT GTTCGATGAG
CAGCTGACCC CTGTGTGCGC ACCGTCACTG CGTGAAGGGC CGGTGCCGTT GCAGCAGGTG
GAAGACCTGG CCAGGCACAT GCTGCTGCAT CCCTCGCGGG ATGAACACGA CTGGCGGTTG
TGGTTGCAGG CGGCTGGAAT GACGCTGGCC ACGCATGGAC CCAAACAGCA TTTCGAGACA
CTGGACATGG CGATGGCCAT GGCCTCGCAG GGGACTGGGG TGGCGATCGG CGATTGGTCG
CTGATTGGCG ATGACCTGCG CGGTGGGCGG TTGTGCATGC CGTTTGCGCT GAAGGTGCTG
ACAGGCAAGG GGTATTACCT GGTGAGCCAG GCCAGGAGCT TACCGCCCGG GCTGCTGGAA
CTGCTGGACT GGCTGGAGGG CCAGGCCAGC CTGTGA
|
|---|
| Protein sequence | MKRLPPLPAL HTFLVTAQHC NFTRAGQQLH ITQGAVSRQI AALEEHLGYA LFKREARGLS
LTREGLDWLP RVQQVFALIE QGVREVGEHS TTLQLKAPTC VMRWLLPRLM EWQALRPDVP
VELTTTVQHG VDLRREGFDA AVVYGDAPNH GLQVRKLFDE QLTPVCAPSL REGPVPLQQV
EDLARHMLLH PSRDEHDWRL WLQAAGMTLA THGPKQHFET LDMAMAMASQ GTGVAIGDWS
LIGDDLRGGR LCMPFALKVL TGKGYYLVSQ ARSLPPGLLE LLDWLEGQAS L
|
|---|
| |