Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1384 |
Symbol | ttgC |
ID | 1041923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1576789 |
End bp | 1578243 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144785 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | NP_743543 |
Protein GI | 26988118 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.285433 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAGT CTTTGTTGTC CCTGGCGGTA ACCGCTTTCA TTCTTGGCGG CTGCTCGCTG ATCCCTGACT ACCAGACCCC GGAGGCGCCG GTGGCTGCGC AGTGGCCGCA AGGCCCTGCT TACTCGCCGA CGCAATCGGC GGATGTTGCC GCTGCTGAAC AGGGCTGGCG CCAGTTCTTC CACGACCCGG CGCTGCAACA GCTGATCCAG ACCTCGCTGG TCAATAACCG CGACCTGCGC GTCGCGGCGT TGAACCTCGA CGCCTACCGT GCGCAATACC GCATTCAGCG CGCCGACCTG TTCCCGGCGG TTTCGGCCAC CGGCAGCGGC AGCCGCCAGC GTGTCCCGGC GAACATGTCG CAAACGGGCG AATCTGGCAT CACCAGCCAG TACTCGGCCA CCTTGGGCGT CAGCGCCTAC GAGCTGGACC TGTTCGGCCG CGTGCGCAGC CTGACCGAGC AGGCCCTGGA AACCTACCTC TCCAGCGAGC AGGCGCGTCG TTCCACGCAA ATCGCCCTGG TAGCCAGCGT GGCCAACGCC TACTACACCT GGCAGGCCGA CCAGGCCCTG TTCAAGCTGA CCGAAGAAAC GCTGAAGACC TACGAGGAAA GCTACAACCT CACCCGTCGC AGCAACGAAG TCGGCGTGGC CTCGGCCCTG GACGTCAGCC AGGCGCGTAC CGCCGTGGAA GGCGCCAGGG TCAAGTACTC GCAGTACCAG CGCCTGGTCG CCCAGGACGT CAACAGCCTG ACCGTGCTGC TGGGCACCGG CATTCCTGCC GACCTGGCCA AGCCGCTGGA GCTTGATGCC GACCAACTGG CCGAAGTACC GGCCGGCCTG CCATCGGATA TTCTTCAGCG TCGCCCGGAC ATTCAGGAAG CCGAGCACCT GCTCAAGGCT GCCAACGCCA ACATTGGTGC AGCCCGCGCA GCGTTCTTCC CGAGCATCAG CCTGACCGCG AACGCCGGCA GCCTGAGCCC CGACATGGGC CACCTGTTCT CGGGCGGCCA GGGCACCTGG CTGTTCCAGC CGCAGATCAA CCTGCCGATC TTCAACGCCG GCAGCCTCAA AGCCAGCCTG GACTACTCGA AAATCCAGAA GGACATCAAC GTCGCCAAGT ACGAAAAAAC CATCCAGACG GCCTTCCAGG AAGTCTCCGA TGGCCTGGCG GCACGCAAGA CCTTCGAAGA GCAGTTGCAG GCCCAGCGCG ACCTGGTGCA GGCGAACCAG GACTACTACC GCTTGGCCGA ACGCCGTTAC CGCATCGGGA TTGACAGCAA CCTGACCTTC CTCGATGCCC AACGCAACCT GTTCAGTGCC CAGCAAGCGC TGATCGGAGA CCGCCTGTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG GCGCTTGGCG GTGGCTGGTA CGAGCAGACC GGGCAGGCCA ACCAGCAGGC ATCGGTGGAA ACACCGAAAG GCTGA
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Protein sequence | MTKSLLSLAV TAFILGGCSL IPDYQTPEAP VAAQWPQGPA YSPTQSADVA AAEQGWRQFF HDPALQQLIQ TSLVNNRDLR VAALNLDAYR AQYRIQRADL FPAVSATGSG SRQRVPANMS QTGESGITSQ YSATLGVSAY ELDLFGRVRS LTEQALETYL SSEQARRSTQ IALVASVANA YYTWQADQAL FKLTEETLKT YEESYNLTRR SNEVGVASAL DVSQARTAVE GARVKYSQYQ RLVAQDVNSL TVLLGTGIPA DLAKPLELDA DQLAEVPAGL PSDILQRRPD IQEAEHLLKA ANANIGAARA AFFPSISLTA NAGSLSPDMG HLFSGGQGTW LFQPQINLPI FNAGSLKASL DYSKIQKDIN VAKYEKTIQT AFQEVSDGLA ARKTFEEQLQ AQRDLVQANQ DYYRLAERRY RIGIDSNLTF LDAQRNLFSA QQALIGDRLS QLTSEVNLYK ALGGGWYEQT GQANQQASVE TPKG
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