| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1076 |
|---|
| Symbol | glpF |
|---|
| ID | 1044845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1235335 |
|---|
| End bp | 1236186 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637144471 |
|---|
| Product | MIP family channel protein |
|---|
| Protein accession | NP_743237 |
|---|
| Protein GI | 26987812 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTG CTCTGCGCCA ACCCACACTG TCCAGCCAAT GCCTGGCCGA GTTTCTCGGC
ACCGCCCTGC TCATCTTCTT CGGTACCGGC TGCGTCGCCG CGCTCAAGGT GGCCGGCGCC
AGCTTCGGGC TTTGGGAAAT CAGTATCATC TGGGGCGTGG GCGTCAGCAT GGCCATCTAC
CTCACCGCCG GTATTTCCGG TGCGCACCTG AACCCAGCCG TGAGTATCGC CCTCACACTG
TTCGCAGGGT TCGACAAGCG CAAGCTGCCC TTCTACATGC TGGCCCAGGT ATGCGGCGCA
TTCTGTGGCG CAGCACTGGT CTACACGCTG TACAGCAATC TGTTCTTCGA TTTCGAACAA
GCCCACGCCA TGCTGCGCGG TAGCGAAGGC AGCCTGGAGC TGGCCTCGGT GTTCTCCACC
TACCCGCACC CGTCGCTGTC CACCAGCCAG GCGTTTCTGG TTGAAGTGGT GATCACTGCC
ATTCTGATGG CCGTGATCAT GGCCCTGACC GACGACAACA ACGGCCTGCC GCGCGGCGCC
ATGGCCCCGC TGCTGATCGG CCTGCTGATT GCAGTGATTG GCAGCGCCAT GGGCCCATTG
ACTGGCTTTG CGATGAACCC GGCCCGCGAT TTCGGGCCAA AACTCATGAC CTTCCTGGCC
GGTTGGGGCG AAATCGCCTT CACTGGCGGG CGGGATATTC CCTATTTCCT GGTTCCGGTA
TTTGCACCGA TCCTTGGCGC CTGCTTGGGT GCAGCGAGCT ATCGCGGCCT GATTGCACGC
AACCTGCCAA TGGCGCCCGC CGCGACCCCT GAGACAAATG ACATTCGCCA GGGCGATACT
CAAGCCAATT GA
|
|---|
| Protein sequence | MTTALRQPTL SSQCLAEFLG TALLIFFGTG CVAALKVAGA SFGLWEISII WGVGVSMAIY
LTAGISGAHL NPAVSIALTL FAGFDKRKLP FYMLAQVCGA FCGAALVYTL YSNLFFDFEQ
AHAMLRGSEG SLELASVFST YPHPSLSTSQ AFLVEVVITA ILMAVIMALT DDNNGLPRGA
MAPLLIGLLI AVIGSAMGPL TGFAMNPARD FGPKLMTFLA GWGEIAFTGG RDIPYFLVPV
FAPILGACLG AASYRGLIAR NLPMAPAATP ETNDIRQGDT QAN
|
|---|
| |